AMCG00011639 (tmem107,LOC106574226)


Basic Information

Item Value
gene id AMCG00011639
gene name tmem107,LOC106574226
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 1726445 ~ 1735712 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011639
CTCGCGAGAAGTGCGGCAGTTGCTGTAGCAACGAGCGGGCAGCGCCTGTGCACGACGCgtgtaaacaaaattaaacagcaTTGGGGTCTTAATGTCAGCTTAGCAAGTTATCCCGCCGGCCTTTTCAATGCGAGGCAGCAGTGCGCGGTGATTGCTGCACTTTAAACGCGCGTCCGGTCCTGCTGCAGCCTGACGtgtgtgcatgtgcgtgtgtacGTACTCTGCCCTGCTGACAGGAGCCCGGCCCGTCAGAAACATGCGCGCCGTGAGCAGCCTGGTACCGGCCCGCTTCCTCACCCTCACCGCCCACCTGGTCATCGTCATCACCATATTCTGGTCCCGGGAGAACAACGTGCTGGCCTGCCTGCCCCTGGACACCACACCGGAGGAGTACAACAGCCGCGACACAGAgctggtAGTCGCTCTCTCGGTGACCCTGGGCCTGTTTGCCATCGAGCTGGCTGGCTTCCTGTCCGGAGTGTCCATGTTCAACAGCAGCCAGGGCCTCCTCTCGCTGGCGGCTCACTGCAGCGCCTCCGTCTGCCTGTCCTTCTTCGTGTTCCAGCGCTGGGAGTGCTGGACCTACTGGTTCATACTGGGATTCTGCAGCGCTCTGCCAGCCTTCGTTGAGGTGGTGCTCTTCATCGCGGTGTTTGGGCTGAAGAAGAAGCCGTTCTGAGAtgcctgccacacacacacacacacacacacacacacacacacacaccgaccaggagagagagagagagggccggCAGGCAGGACCTCTCGGTGCACGGATCCCTGGAACCCCATGAGCCACAAACGTTTGGCAGACGTTTGTATTTggttattaatacaaaaataaaataaaccctaCAGTTCCTATCACCAACACAAGAGGGCGAGTCTCTGTATTGACGGACCGGCTACTATCAGTTGGTTTGAGTGCATTGTAGAGACACTGTAAGACTCATGCTATCTGGAGAGAGTAATTGAGTAAATACCCCGTTGTGTGGAGGGGTTGGGGTGGATTTGTTGCCCTGTGATGAACAGAACTGTACCCTCCAATCTCGGCTTCCGCAAGGCCGGGATAAGAGCTCCAGGCAAAGGGGGCAAGCAATAAACAACGCATTCCTAATTAAAGCTGATTTTCAGGTCgaagtaatttgtaattttgtatttagttgTCAACAATCACAGTAACAATAATAGCAGCACAttgtaaagttttgttttgtttgaatccCATGGTGTTCACGTCTGCGTTTCCTGtatatcagtttgtttttttactgatgTTTTTACACAAAACCAATAAATTGAACAGAATCTAATTGA

Function

symbol description
tmem107 Predicted to be involved in non-motile cilium assembly and protein localization to ciliary transition zone. Predicted to act upstream of or within cell projection organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of MKS complex. Human ortholog(s) of this gene implicated in Meckel syndrome 13 and orofaciodigital syndrome XVI. Orthologous to human TMEM107 (transmembrane protein 107).

NR:

description
PREDICTED: transmembrane protein 107-like isoform X3

GO: NA

KEGG:

id description
K22764 TMEM107; transmembrane protein 107

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011639 True 1320 mRNA 0.52 6 1726445 1735712

Neighbor

gene id symbol gene type direction distance location
AMCG00011638 aurkb,plk4,LOC107704466,LOC107705065,LOC100706117 coding downstream 1869 1721697 ~ 1724576 (-)
AMCG00011635 LOC108442099 coding downstream 42913 1673442 ~ 1683532 (-)
AMCG00011634 NA coding downstream 56245 1668896 ~ 1670200 (-)
AMCG00011636 NA coding downstream 130246 1593707 ~ 1596199 (-)
AMCG00011627 NA coding downstream 190800 1529619 ~ 1535645 (-)
AMCG00011644 NA coding upstream 1929 1737641 ~ 1740415 (-)
AMCG00011641 NA coding upstream 6376 1742088 ~ 1750534 (-)
AMCG00011643 NA coding upstream 29031 1764743 ~ 1767565 (-)
AMCG00011642 NA coding upstream 31866 1767578 ~ 1772285 (-)
AMCG00011647 NA coding upstream 61920 1797632 ~ 1799106 (-)
G131633 NA non-coding downstream 57765 1666554 ~ 1668680 (-)
G131625 NA non-coding downstream 83417 1642805 ~ 1643028 (-)
G131615 NA non-coding downstream 94685 1631457 ~ 1631760 (-)
G131604 NA non-coding downstream 120160 1606052 ~ 1606285 (-)
G131546 NA non-coding downstream 330093 1395693 ~ 1396352 (-)
G131691 NA non-coding upstream 39777 1775489 ~ 1845721 (-)
G131709 NA non-coding upstream 131081 1866793 ~ 1879291 (-)
G131741 NA non-coding upstream 164881 1900593 ~ 1915550 (-)
G131751 NA non-coding upstream 211735 1947447 ~ 1948939 (-)
G131756 NA non-coding upstream 264697 2000409 ~ 2002192 (-)
AMCG00011645 mpp1,vamp2,LOC106603197,LOC106523110,LOC107742350,LOC107720682,LOC107554313,LOC107082578,LOC107386619 other downstream 7219 1707717 ~ 1719226 (-)
AMCG00011640 NA other downstream 21446 1686309 ~ 1704999 (-)
AMCG00011603 NA other downstream 720308 998991 ~ 1006137 (-)
AMCG00011601 NA other downstream 916288 790008 ~ 810157 (-)
AMCG00011597 mink1,LOC103395422,LOC107746403,LOC107596107 other downstream 1006038 699818 ~ 720407 (-)
AMCG00011648 LOC104949454,LOC101069368,LOC103480483 other upstream 114187 1849899 ~ 1864772 (-)
G131863 NA other upstream 557921 2293633 ~ 2296453 (-)
G132117 NA other upstream 725395 2461107 ~ 2461750 (-)
G132140 NA other upstream 831033 2566745 ~ 2577837 (-)
AMCG00011711 neurl4,LOC106577658 other upstream 874016 2609728 ~ 2617328 (-)

Expression


Co-expression Network