AMCG00011648 (LOC104949454,LOC101069368,LOC103480483)


Basic Information

Item Value
gene id AMCG00011648
gene name LOC104949454,LOC101069368,LOC103480483
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 1849899 ~ 1864772 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011648
tccctctctcgcccTTCTCTCCGTGCAGGCGAGTGAGTGTCTGTGCTGACAGAGAAGTTTCACGCGTGGACTCGGCGGACATgccatgccccccccccacggCACGGGGGATCGTGTCGGGCTCTCTTCCACAGCCTCCCGCACCGAGGACGGGACCGCAACACACGGGCgacgggaggaggaggaggaggagggggcggaGGAGGCGTACTATATGGCGTGAAAGTAGTGGCTGTAGTGCACTAGTTGTGCTGCACGGCGGGTTCAGTGCTGGCATGATCGGTGCATGTGTGCAAAGCGGGGCGgccttttaaacattaaaaggcGGCCGAAACAGCACCAGCCACCCACTGCAGCACCGGCGCGGACGCAACACGCATAACTCAGCAGCGCGAGAGCCTTTTGCGAAGGAGcgagacacgcacacgcacacgcgcgCCCCGCAGGGTCCGGCCCCGCACCGCCGCAGCCATGGAGACCCCGCCGCCCGAGCCGTGCTGCGAGGACGTGCGCAAGTGCGGCTACCTCCGCAAGCAGAAGTCCATGCACCGGCGCTACTTCGTGCTCCGGGCGGCCTCTCACCGGGGCCCGGCCCGCCTGGAGTGCTACGAGAACGAGAAGAAATTCCGGGGCAAGAGCCCGGTGCCCAAGAAAGCCCTGAACCTGGAGACGTGCTTCAACATCAACAAGCGGGCCGACGCCAAGAACAAGCACCTGATCGTGGTCTACACCCGGGAGGAGAGCTTCGCCATCGCGGCGGACAGCGAGGCGGGCCAGGCGGAGTGGTACGATGCCATGGTGGAGCTACAGTGCAAAAGCAAATCCCCCACCGAGTGCCCGCAGTACGGGGGTCCCGGTCCCGGCCCGGCCTTCAAGGAGGTGTGGCAAGTCAAGCTGTGGCCCAAGGGCCTCGGTCAGGCCAAGAGCCTGGCTGGGGTTTACCGGCTGTGCCTGACGGAGCGCACGGTCAGCTTCGTGCGGCTGCACAGTGAGGTGGCGGCCGTGGTGCTGCAGCTGCTCAACGTGCGCCGCTGTGGCCACTCGGAGAACTTCTTCTTCGTGGAGGTGGGCCGCTCGGCCGTCACCGGTCCCGGCGAGTTCTGGATGCAGGTGGACGACGCCGTGGTGGCCCAGAATATGCACGAGACCCTGCTGGACGCCATGAAGGCCCTGAGCGAGGAGTTCCGCCAGCGCACCAAGAGCCAGTCCTCCTCGGCCAACGCCAACGCTGCGGCGGCCACGGGGGCCACCCAGGCCTCCCCcgcccccacctcctcctcctccgcttcctcctcttcctccaccaCCACCGTCTCCTCGCACCCCATCAGCGTACCCTCCCGCCGCCACCACTCGCACCCACACCCGCCCCCCAGCCAGGTGGGCCTGCCCCGGCGCCCGCGCACCGACACCGGAGGGGCTGGCGGCAGTAGCAGCACCTCCCCCCTGGCCAAAACCTTCCCCCGGGCGCGGACTGCCAGTGACAGTAGGCGGGCCAGGATGGAGGAGGCGGGCGGCGGGGCCCAGGGGGCACGAGGAGGTGGGTCCCCCGACCGGTCTAGCTCCTGCTCCACCACCCCTAAGTCCGTGCGGGCGTGCACCCCCGCCAAGACCCCCCTAGGCCTGGCCCGAGCCACCCCCGTGCCCCCCTCCGCCGAGTGCGGGGCGGAGGCGGCCTCGGGGTCCCCCAGCGACTACGGCTCTTCGGACGAGTACGGCTCCAGCCCGGGCGAGCCGTCCCCTCGCCCCCCCGGACCCCCGCAcccgctctccctctccctgtccctcctctcctcccccgATGACCTCCTCCCGGGGGCGTCGGCCTTCCACCAGCCAGAGTCCGACTGCACCTCCAACTACATCGCCATGGGCCGGCGCTCTGTGGCCCGGCAGCCAcagcagcaccaccaccaccagacTCCACTGAGCCAGAACCCGGGCTCCCAGGCCCGCCGGGTCCTGCGGCGCTCCTCGAGCCGAGAGAGCGAGGCGGAGCGCCGGCTGCTGAGCAAGAGGGCCTCCCTGCCCCCCATGGACCTGGAGAAGCTCACCCCCGGCCCCCCAGGGAGGAGGCCGGGCCGGGGTGCGGGGGACGGGGGCGGGAGGACAgtggaggcggaggaggaggactACGCTGTGATGTCGCGCAGCGTCAGCCAAGAGTCCTTCGGCCGGCGCCAGGACTCGGAGGGTGGGGCCTACATGGAGCTGCCCAGCCCGGGGATGGGGCCTCGGGACAACGGCTACATGAGCATGCTGCCCGGGGTGACCGGCgccggggagggggggggcggCGACTACATGGCCATGACCCCCAACAACAGTGTGTCCCCCCCCCAGCAGATCCAGGCCCCCGCCCGGCACCGTGCCCCCTCGCCAGCGCCCTCCCCGTCCCCCTCGCCCTCCCTGTCAGATGGCTACATGATGATGTCGCCGAGCAGCAGCTGCTCACCCGACCAGCGCGGGGTTGGGGGGCCGGGAGGCCCGTCCTGGGGGGCCGACGGGCCACGGCTGGGCGGAGACTACATGAACATGTCACCCCTGAGCGGCCGCTCTGCCTCAGGGGCCCCGCCGGCCCCGCAGCCCTCCCAGCCCCCACCCAAGATGGTGTTCTCCTACTACTCCCTGCCCCGCTCCTACAAGCATGTCCCCCCCGCCGGCTTCGAGGAGGCGGGCGGAGGGGAGGGCGGGAGGAAAGGGAGGCTCCCGTCGTCGTCGTCCACGTCTGGGGGGCTCAGCAACGGCACGGGCCCCCCCGGTAGTCGGCGGGGCccggaggggggtggggggcggccCCTGTTCTCCTCCTGCTCCTACTCCTCCAGCTCCACCAGCAGCGAGAGCCTGGGCGAGGCCGGGGAGGAAGCCCCGACccaggggaagggagggagCGGGGCTGGGGCCCGGGGTGGCCCCGCCCCCTCCGCGGGTGGCCAGCAGTGGAAGAAGCCGCGCAGCCGGCCGGTCAGTCTGTTCGTGGACGTGTCCCGGGCCAACACCCTCCCCAGAGTGCGGGAGGCGCCACCGCCCGCCGAGCCTAAGAGCCCGGGGGAGTACGTCAGCATCGACTTCAGAGCCGGGGCACTGGGGGGCCTGGCCATgccctcgtcctcctcctcgtcctcctcctctcccttctcCTCCAGGCCGCCCTCCTCCACCGCGGTCCTGGGGGGCGGGATCCATGGCCAGCGCAGCCCCTCCGCCCCACCCCACCTCCACACCCTAACCCAACCCCGCATGGAGCCCCCGGCCTCTGAGTACGTCAACATGGACCTGGGCCCCCCCCCAGCAGTGCCCGGCTACCCGCCCACCCATCCCACCCCGGCCATGGCCCCCCTGTCCCTGCCGCAGCGCCGGCCCGAGCGGGGCGCAGCGAACGGGGGCGGGAAGAACTTGGCGTCGGCCCCTACGGAGCCCCCCGCAGCGTTCGGGGACTACACCACCATGGCCTTCAGCAGGGGCCCCCAGACGCCCACCGCGGCCTCCCCTGAGCCGAGCCGGGGGCTGGAGTTAGACTTCCCCCCGGCCAAGGGCGGCCCCAACCCAGACCAGGGCGCCAAGCTAGTGAGGGCAGACCCCCAGGGGCGCCGCCGGCACGGCTCCGAGACTTTCCAGCCCTTGCCGCCGCCGCCACCTCCCTCcgcctcctctctcctccccttccCTGACTCCTCCAGGCTGGGGCTGGACTCCGCGCCCCCTGAGGCCCCCTCTCAGGGCCCGGCTCCCGGGCCACTCCCTTTACCCGCGGCCCAGGCTCCCTCCTGTCTGGAACAAGGCCTCAACTACATTGACCTAGACCTGGTGCCGAAGGAGCCCCCCCACAGTGGCCCCGAGGGAGTCCTGCCGGCGCAGCTGCCCCCCCGTCTCTTCTCCTCCGTCCTGGGGGCCGGTGGGGGCCCGGCGGGGCTGGCAGGGGGCGGCCAGGCGGCGGCTGTCAACACCTACGCCAGCATCGACTTCTACAAAGTGTTGATGGCCTTCCTAAACCCCTCCCCTGAGCAATCCCAGGAGCCAGCACGACCCAATAAGCATGCAGCTGCTGCTGTAGCCCCGCCTCCTCTGTCCAGCAGCCAATCGCCACACACGGGGAGACTGGGGGCCGGGGGGTGGAGCTACAAAGTTGGATGTAATGCTGCGTATTTTCCACACATCCCCAAGAAGCACTTTCTGGaagaatcaaataaatattaataataaaaagaattaaagatatatattttattttttctgcaacTATTTTGCTGAGGGACTCCCGGCCAATCGGAGCTCTGTGTCGGAAGCCTGCCGGCCAATCGGAACTCTGTCAGAGAGCCCGCCTGGCCGATCGAAACTCTCCGGGAGCCCGGCAGCCAATTGGAATCGTGTCACAGAGCCTGCCGGCCAATTAGAGCTCTGTGAGAGCCCGCCTGCCAATCAGAGTTGTTTCAGAGAGCCAATCAGTAGGCAGAACAGACTCCACAGGCCAAGCCAGAGCCAAtgaggatttttcttttctttgatgAGGAAGTAGGGAATAAAATCAATCTATTAATTATAGAAGAAAaccatatatgtgtgtgttgcatatatatatatatatatatatatgcatcttaaaaaaaacaggaagtgcCTCTTATTTTCTGATTGTAGCCATTTTTACAGAAACTCACTTTTTCAGTTGATACACAACTGGTCCTGTAtctataaaaggaaaacaaaaggaataAGGAATAGTTTCTCTCTGTCTGGTGGCCATTTCTTAGCTAACTAGGACTCTAAACCCCATGAATGGCCTTATTATTGTTCTGATTATTGTCGTCGTTGTTGTTTGTTGGGAGCCTGTTTTTGAAGTAGCCTTTACCGAATACATAGTGTGCCTCAAGACACGTGTAGTCAACCTGTGAACGCTCGAGCTGTCGAATcgtctgctctctctctctctctctcttgctgtgcCAGCCCTAACCCCCACCCTCCTCCCTCCACCATTtctcttttgctttttgtttcccAATCCTGCCActgtacaattacattaaaaacaatactgtgagtattttctttttctctccgAGTGAGTCTGTCT
>TU165168
CGGGGCccggaggggggtggggggcggccCCTGTTCTCCTCCTGCTCCTACTCCTCCAGCTCCACCAGCAGCGAGAGCCTGGGCGAGGCCGGGGAGGAAGCCCCGACccaggggaagggagggagCGGGGCTGGGGCCCGGGGTGGCCCCGCCCCCTCCGCGGGTGGCCAGCAGTGGAAGAAGCCGCGCAGCCGGCCGGTCAGTCTGTTCGTGGACGTGTCCCGGGCCAACACCCTCCCCAGAGTGCGGGAGGCGCCACCGCCCGCCGAGCCTAAGAGCCCGGGGGAGTACGTCAGCATCGACTTCAGAGCCGGGGCACTGGGGGGCCTGGCCATgccctcgtcctcctcctcgtcctcctcctctcccttctcCTCCAGGCCGCCCTCCTCCACCGCGGTCCTGGGGGGCGGGATCCATGGCCAGCGCAGCCCCTCCGCCCCACCCCACCTCCACACCCTAACCCAACCCCGCATGGAGCCCCCGGCCTCTGAGTACGTCAACATGGACCTGGGCCCCCCCCCAGCAGTGCCC

Function

NR:

description
PREDICTED: insulin receptor substrate 1-B-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011648 True 5077 mRNA 0.66 3 1849899 1864772
TU165168 False 534 lncRNA 0.74 1 1856565 1857098

Neighbor

gene id symbol gene type direction distance location
AMCG00011650 NA coding downstream 25088 1818991 ~ 1824811 (-)
AMCG00011647 NA coding downstream 50793 1797632 ~ 1799106 (-)
AMCG00011642 NA coding downstream 77614 1767578 ~ 1772285 (-)
AMCG00011643 NA coding downstream 82334 1764743 ~ 1767565 (-)
AMCG00011641 NA coding downstream 99365 1742088 ~ 1750534 (-)
AMCG00011651 NA coding upstream 5919 1870691 ~ 1873493 (-)
AMCG00011649 NA coding upstream 8733 1873505 ~ 1875236 (-)
AMCG00011658 NA coding upstream 37600 1902372 ~ 1904818 (-)
AMCG00011659 NA coding upstream 46872 1911644 ~ 1915846 (-)
AMCG00011660 NA coding upstream 71963 1936735 ~ 1940512 (-)
G131691 NA non-coding downstream 4178 1775489 ~ 1845721 (-)
G131633 NA non-coding downstream 181219 1666554 ~ 1668680 (-)
G131625 NA non-coding downstream 206871 1642805 ~ 1643028 (-)
G131615 NA non-coding downstream 218139 1631457 ~ 1631760 (-)
G131604 NA non-coding downstream 243614 1606052 ~ 1606285 (-)
G131709 NA non-coding upstream 2021 1866793 ~ 1879291 (-)
G131741 NA non-coding upstream 35821 1900593 ~ 1915550 (-)
G131751 NA non-coding upstream 82675 1947447 ~ 1948939 (-)
G131756 NA non-coding upstream 135637 2000409 ~ 2002192 (-)
G131833 NA non-coding upstream 194007 2058779 ~ 2059607 (-)
AMCG00011645 mpp1,vamp2,LOC106603197,LOC106523110,LOC107742350,LOC107720682,LOC107554313,LOC107082578,LOC107386619 other downstream 130673 1707717 ~ 1719226 (-)
AMCG00011640 NA other downstream 144900 1686309 ~ 1704999 (-)
AMCG00011603 NA other downstream 843762 998991 ~ 1006137 (-)
AMCG00011601 NA other downstream 1039742 790008 ~ 810157 (-)
AMCG00011597 mink1,LOC103395422,LOC107746403,LOC107596107 other downstream 1129492 699818 ~ 720407 (-)
G131863 NA other upstream 428861 2293633 ~ 2296453 (-)
G132117 NA other upstream 596335 2461107 ~ 2461750 (-)
G132140 NA other upstream 701973 2566745 ~ 2577837 (-)
AMCG00011711 neurl4,LOC106577658 other upstream 744956 2609728 ~ 2617328 (-)
AMCG00011708 slc25a35,LOC108245198,LOC102784467,LOC104950662 other upstream 777891 2642663 ~ 2643456 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033608 si:ch73-335l21.1 coding NC_007118.7 CM002891.2 20147202 ~ 20225261 (+)
grasscarp (Ctenopharyngodon idella) CI01000344_01570261_01591115 NA coding CI01000344 null 1570261 ~ 1591115 (+)