AMCG00011680


Basic Information

Item Value
gene id AMCG00011680
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 2226336 ~ 2231073 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011680
GGCGGGAAAGCGGGTTCGCTGTGGCTCTTGTCAGCGGCTCTGCTCTGGAACTTCATATCCCGACACGCTTAGCGGCATTAAACCCCAAGCAGTCTTTGACAACGAGCTCAGAGCGGCGCTGGGGGATGTAGTCTTTAGTTGTGTTATTGTGGGTGTTGATATTGTGACATAAACTTGACAACTAGTGCAATcgaggaaattattattatgtcttacagaataaacaaacaaaaaaaggtgtATGCAAATGCATGCGTTTAATTAAGTGATACGATGAAACGCTTCTGGATTTAAGCTTCAGTTCCAATATCGATATgttaattataatgcatttgttttaaagtgctcTAATCGGTATATGGTAAAactttttcttgtgtgtttataCCACCCCTTTGAAAGCGAGGGCATCATCATCCCGGGAGAGGATTGAAGCGGGTGTACATCCACAGGCCCCGCAGGAGCCCCGGTGTGGAGTTGTGAGTGGCCGCGGCGAGCGAGGCGCACAGAAGCGGGGAGAGACGCGGCCAGCAGGGAGGCTGTAGGGCACCGGTCGCAGCATGCTGCTGGAGCTCATTCAGGGCACAGAAGGCGGAGGATTCGTCGTCATCACAGACTCGGCGGAGTGCCCGGCCCGGCCGCTTCTCAAAAGCTTTGTCAATGCGGCGCTGAAACGGGGGGAGCAGGTCCACGTCTTGGGGTTCGATGTGTCCGAGGAGGAGCTGCGTTCCGGGCTGGAGGTGGAGGCGGCGCACAGGCTGCTGTTCCACGATGGCTACACTGATCCCTTGGGCTGGCGAGGCCGGGACGGGCCCTCGGCGTCCCACTTCTCCGCTCAGGAGATCGGGACCCGGGTGGGCCAGACGCGGGATGCCGGGCCGGTGACGCTGGTCGTGGACTCTCTGTCCTGGGTCCTCCGGCACAGTCCCCCCGCCGCCGTCTGCCAGGCACTGCAGGAGCTGCGGAGAGGGGCGGCGGCGAAGCGTATTGTGCTCCTCCTGCACTCGGACCTACACCCGCTGGGCGTCGTGGGCAGCGTGTGCCACCTGGCCAGCGCCGTCGTAGCGGTGGCGGCCTACTGCGGGCCGGGGGGGGCGGGCGGCGAGGCAAGGCCGCAGGGCGTGGCCACATCGACCCGGCGGAGCAAGTCGGGGAAGGTGTTGAGAGAGGAGGAGGGCTTCTCCGTGGGGGAGGGGTTCCTGGTCCAGGTGCAGGGCCGACACCCCCAGCCCAGGTGGACCGAGCCTGAGCCCGAGGACACACAGgctGACCCCGCCGCCAACCTGACCTTTAACCTCCGGCTGTCCGAGGGCGAGCGGCAGGCGAGGGAGAAGCTGCCCCTTCCGTTCGCTTTCAGCTCCGAGCGGAAGTCCGCCCTGCTGCAGCCTCGCTCTGGCGGCGGCCGGATCCTCTATGAACCCGACGCCGCGGACGACTTCGACCAGGAGGACCCGGACGACGACCTGGACGTCTGACCTGCGGCCAGATTTACCCCGTTTCCCTTCCCGATCCAAGCCAGTGGACTGTAGTCCATTCCGGTTCTCCGGACGAGGTGTGCCGTACCCGGCTGCTGGTGGAACCGCGGTTCCCAGCTGGAAGGATCGGCACAGAGCTGTGGAGAGACGTCTTCCTGGCCTCCTTTCCGTCAGGACTCTGTATCTCGTAGGGAAAAGCAAGAGAAACCAGTGTATATACTCCTGACTTGTTCAATAAATACCGGTTGTGGTTTTGCTGACTTTTGTGGCACGATGTAACTTgacggtttgtttgtttctgtgcgGTTCACACTCTTGCCCACCAGAGGGCGTGGGCAGACCTGTCCTGATCTGCCCCAGGGGAGGGTGGAAGTGGATCGAGCCCAACTTGTACCTGAACCCCGACCGCTACGGTGGCCCAGTGGGTAAGATTGATGGGATTGGGGGTCCATCATTCTCTTCGAAGTGGAACCGAAATTCAATGAATGCAAAACCGTGAGATGTCaactgtaaacaaataaaatgaccaTTCACCATGA

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011680 True 2014 mRNA 0.59 8 2226336 2231073

Neighbor

gene id symbol gene type direction distance location
AMCG00011684 NA coding downstream 840 2215534 ~ 2225496 (-)
AMCG00011681 gbrap,gabarap,LOC106577557 coding downstream 13047 2207821 ~ 2213289 (-)
AMCG00011679 NA coding downstream 26388 2198120 ~ 2199948 (-)
AMCG00011678 dvl2,LOC102202272 coding downstream 30109 2188253 ~ 2196227 (-)
AMCG00011672 acadvl,LOC107738021,LOC107595296,LOC107731915,LOC107597078 coding downstream 46048 2155079 ~ 2180288 (-)
AMCG00011677 NA coding upstream 5844 2236917 ~ 2238518 (-)
AMCG00011682 NA coding upstream 36898 2267971 ~ 2268189 (-)
AMCG00011683 NA coding upstream 37510 2268583 ~ 2272806 (-)
AMCG00011692 NA coding upstream 82556 2313629 ~ 2317588 (-)
AMCG00011690 NA coding upstream 105592 2336665 ~ 2337853 (-)
G131833 NA non-coding downstream 166729 2058779 ~ 2059607 (-)
G131756 NA non-coding downstream 224144 2000409 ~ 2002192 (-)
G131751 NA non-coding downstream 277397 1947447 ~ 1948939 (-)
G131741 NA non-coding downstream 310786 1900593 ~ 1915550 (-)
G131709 NA non-coding downstream 347045 1866793 ~ 1879291 (-)
G131871 NA non-coding upstream 3539 2234612 ~ 2236805 (-)
G131873 NA non-coding upstream 15698 2246771 ~ 2247129 (-)
G131884 NA non-coding upstream 47160 2278233 ~ 2278516 (-)
G131864 NA non-coding upstream 55796 2286869 ~ 2298484 (-)
G131889 LOC107384710,LOC100693841,LOC103365478,LOC106560692,LOC106602896,LOC107098142,LOC102777155,LOC105007919,LOC101477102 non-coding upstream 58437 2289510 ~ 2292486 (-)
AMCG00011648 LOC104949454,LOC101069368,LOC103480483 other downstream 361564 1849899 ~ 1864772 (-)
AMCG00011645 mpp1,vamp2,LOC106603197,LOC106523110,LOC107742350,LOC107720682,LOC107554313,LOC107082578,LOC107386619 other downstream 507110 1707717 ~ 1719226 (-)
AMCG00011640 NA other downstream 521337 1686309 ~ 1704999 (-)
AMCG00011603 NA other downstream 1220199 998991 ~ 1006137 (-)
AMCG00011601 NA other downstream 1416179 790008 ~ 810157 (-)
G131863 NA other upstream 62560 2293633 ~ 2296453 (-)
G132117 NA other upstream 230034 2461107 ~ 2461750 (-)
G132140 NA other upstream 335672 2566745 ~ 2577837 (-)
AMCG00011711 neurl4,LOC106577658 other upstream 378655 2609728 ~ 2617328 (-)
AMCG00011708 slc25a35,LOC108245198,LOC102784467,LOC104950662 other upstream 411590 2642663 ~ 2643456 (-)

Expression


Co-expression Network