AMCG00011700 (capgb,capg,LOC107665882,LOC107657288,LOC107556576,LOC107584402,LOC107733451)


Basic Information

Item Value
gene id AMCG00011700
gene name capgb,capg,LOC107665882,LOC107657288,LOC107556576,LOC107584402,LOC107733451
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 2481091 ~ 2485730 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011700
ATGCAGCCACTGAAGGCCAGTCCGGGGCAGTTCGGCCCCAGTGCCCACGAGCCCGGGTTGCACGCCTGGCGAGTGGAGAAGATGAAGGCCGTTCCGCTGCCCGCCAAGGAGCTGGGTGCCTTCTTCAATGGGGACGCCTACCTGCACCGCGAGACACAGGGCTTCGAGTCACGCGAGTTCATGCAGCTGTTCCCCCGTGGGGTCACATACAAGGTGggctgggagggagagaggaaggccAAGGGGGATGGGGGGGTGGAGTCCGGGTTCCGGAAGAGCCAGGGGGGGGCGGCGGTGCAGAGACTCTACCAGATCAAGGGCAAGAAGAAGATCCGAGCCAGAGAGGTGTCGGACGCCACGGGCACCATGAAGCTGACCAAGGTGTCAGACAAGACCCCATTGGCCAAGGACCTGCTGCAGAAGGACGACTGCTTCATCCTGGACAGTGGCTCCAACGGCAAGATCTTCATCTGGAAAGGAAGCGGCGCCAatgtggaggagaagaaggcCGCCCTGAAGATGGCCGATGACTTCATAAAGCAGATGAACTACCCCCTCAAAACACAGGTGTGCTGCCCCACCCCGGCCCCCCAAAAGTGA

Function

symbol description
capgb Predicted to enable actin filament binding activity. Predicted to be involved in actin filament severing and actin polymerization or depolymerization. Predicted to act upstream of or within barbed-end actin filament capping. Predicted to be located in several cellular components, including lamellipodium; melanosome; and ruffle. Orthologous to human CAPG (capping actin protein, gelsolin like).
capg Enables protein domain specific binding activity. Predicted to be involved in several processes, including actin filament severing; actin polymerization or depolymerization; and barbed-end actin filament capping. Predicted to act upstream of or within cellular response to interferon-gamma. Located in several cellular components, including Flemming body; microtubule cytoskeleton; and nuclear lumen.

NR:

description
PREDICTED: macrophage-capping protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011700 True 600 mRNA 0.62 5 2481091 2485730

Neighbor

gene id symbol gene type direction distance location
AMCG00011699 NA coding downstream 7784 2468228 ~ 2473307 (-)
AMCG00011698 NA coding downstream 64495 2403971 ~ 2416596 (-)
AMCG00011697 eif5a,LOC107691471 coding downstream 87719 2387612 ~ 2393372 (-)
AMCG00011691 NA coding downstream 115097 2362204 ~ 2365994 (-)
AMCG00011693 NA coding downstream 122747 2355679 ~ 2358344 (-)
AMCG00011703 polr2a coding upstream 10334 2496064 ~ 2510692 (-)
AMCG00011709 NA coding upstream 106129 2591859 ~ 2599202 (-)
AMCG00011710 NA coding upstream 153733 2639463 ~ 2641522 (-)
AMCG00011707 LOC105907188,LOC103386604,LOC106608754,LOC103358028 coding upstream 170499 2656229 ~ 2656728 (-)
AMCG00011716 NA coding upstream 263464 2749194 ~ 2776484 (-)
G132116 NA non-coding downstream 21130 2459748 ~ 2459961 (-)
G132078 NA non-coding downstream 33668 2415483 ~ 2447423 (-)
G131913 NA non-coding downstream 152109 2328597 ~ 2328982 (-)
G131909 NA non-coding downstream 153383 2327127 ~ 2327708 (-)
G131905 NA non-coding downstream 161093 2317940 ~ 2319998 (-)
G132126 NA non-coding upstream 6613 2492343 ~ 2499180 (-)
G132129 NA non-coding upstream 25773 2511503 ~ 2515213 (-)
G132137 NA non-coding upstream 64726 2550456 ~ 2551120 (-)
G132138 NA non-coding upstream 66628 2552358 ~ 2553259 (-)
G132151 NA non-coding upstream 148566 2634296 ~ 2634952 (-)
G132117 NA other downstream 19341 2461107 ~ 2461750 (-)
G131863 NA other downstream 184638 2293633 ~ 2296453 (-)
AMCG00011648 LOC104949454,LOC101069368,LOC103480483 other downstream 616319 1849899 ~ 1864772 (-)
AMCG00011645 mpp1,vamp2,LOC106603197,LOC106523110,LOC107742350,LOC107720682,LOC107554313,LOC107082578,LOC107386619 other downstream 761865 1707717 ~ 1719226 (-)
AMCG00011640 NA other downstream 776092 1686309 ~ 1704999 (-)
G132140 NA other upstream 81015 2566745 ~ 2577837 (-)
AMCG00011711 neurl4,LOC106577658 other upstream 123998 2609728 ~ 2617328 (-)
AMCG00011708 slc25a35,LOC108245198,LOC102784467,LOC104950662 other upstream 156933 2642663 ~ 2643456 (-)
AMCG00011741 LOC107676000,LOC107586166 other upstream 683978 3169708 ~ 3173836 (-)
G132352 NA other upstream 715640 3201370 ~ 3207354 (-)

Expression


Co-expression Network