AMCG00011703 (polr2a)


Basic Information

Item Value
gene id AMCG00011703
gene name polr2a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 2496064 ~ 2510692 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011703
ATGCACGGACCGCCCTCCGGCGACAGCGCATGCCCACTGCGCCTGATCAAGAGAGTGCAGTTCGGCATCATCAGCCCAGATGAACttAAACGCATGTCTGTTACAGAAGGGGGCATCAAGTACCCCGAAACCACAGAAGGGGGCCGCCCCAAGCTGGGGGGGCTCATGGACCCCCGGCAAGGGGTCATCGAGAGGTCGGGGCGATGTCAGACATGTGCAGgtAACATGACAGAGTGCCCGGGCCACTTCGGCCACATCGAGCTGGCCAAGCCGGTGTTCCACGTGGGCTTCGTCACCAAGATCATGAAGGTGCTGCGCTGCGTCTGCTTCTTCTGCTCCAAGCTGCTGGTGGACTCGaacAATCCGAAGATCAAGGACATCCTGGTGAAGTCCAAGGGGCAGCCCCGCAAGCGCCTGACCCACGTGTACGACCTATGCAAGGGCAAGAACATCTGCGAGGGTGGTGAGGAGATGGACAACAAGTTCGGCGTGGAGCAGGCCGAGGCTGAGGAGGACATCAGCAAGGAGAAGGGCCACGGGGGCTGCGGGCGCTACCAGCCGCGCATCCGGCGCTCGGGGCTGGAGCTGTACGCCGAGTGGAAGCACGTGAATGAGGACTCGCAGGAGAAGAAGATCCTGCTGAGCCCCGAGCGCGTCCACGAGATCTTCAAGCGCATCTCCGATGAGGAGGACCACATCCTGGGCATGGACCCCAAGTTCTCCCGGCCCGAGTGGATGATCGTCACCGTGCTGCCCGTGCCCCCCCTGTCCGTGCGGCCCGCCGTAGTCATGCAGGGGTCCGCCCGCAACCAGGCCATGCAGAAGTCCGGCCGCCCCCTGAAGTCCCTCAAGCAGCGGCTCAAGGGCAAGGAGGGCCGGGTGCGCGGCAACCTGATGGGCAAGCGTGTGGACTTCTCGGCCCGCACGGTCATCACCCCCGACCCCAACCTGCAGATCGACCAGGTGGGCGTGCCGCGCTCCATCGCCGCCAACATGACCTTCCCCGAGATAGTCACGCCCTTCAACATCGACCGgctgCAGGAGCTGGTGCGCCGGGGCAACAGCCAGTACCCGGGGGCCAAGTACATCATCCGTGACAACGGGGACCGCATCGACCTGCGCTTCCACCCCAAGCCTAGCGACCTGCACCTGCAGATCGGATACAAGGTGGAGAGACACATGTGTGACGGAGACATCGTCATCTTCAACAGACAGCCCACGCTGCATAAGATGTCCATGATGGGGCACAGGGTGCGCATCCTGCCCTGGTCCACCTTCAGACTCAACCTCAGcGTGACCACCCCCTACAATGCGGACTTTGACGGGGACGAGATGAACCTGCACCTGCCGCAATCCCTGGAGACGCGGGCGGAGATCCAGGAGCTGGCCATGGTGCCCCGTATGATCGTCACGCCCCAGTCCAACAGGCCCGTCATGGGCATCGTGCAGGACACACTGACCGCCGTGCGCAAGTTCACCAAGAGGGACGTCTTCTTAGAGAGGCCGGCCGTGCTGAAGCCCCGCCCCCTGTGGACGGGCAAGCAGGTGTTCTCTCTGATCATCCCCGGGCACATCAATGCCATCCGCACCCACAGCACCCACCCCGACGAGGAGGACAGCGGCCCCTACAAGCACATCTCCCCTGGGGACACCAAGGTCATCGTGGAGAACGGCGAGCTGATCATGGGCATCCTGTGTAAGAAGTCTCTGGGCACGTCGGCCGGCTCCCTGGTGCACATCTCCTACCTGGAGATGGGCCACGACGTCACGCGGCTCTTCTACAGCAACATCCAGACGGTCATCAACAACTGGCTGCTCATCGAGGGTCACTCGATCGGTATTGGAGACTCCATTGCCGACGCCAAGACCTACCTGGACATCCAGAACACCATCAAGAAGGCCAAGCAGGATGTGATAGAGGTCATTGAGAAGGCCCACAACAACGAGCTGGAGCCGACCCCCGGCAACACGCTGAGGCAGACCTTTGAGAACCAGGTGAACCGCATCCTGAACGACGCCCGAGACAAGACTGGCTCGTCCGCCCAGAAGTCCCTGTCTGAGTACAACAACTTCAAGTCCATGGTGGTGGCCGGTTCCAAGGGCTCCAAGATCAACATCTCGCAGGTCATCGCGGTGGTGGGGCAGCAGAACGTGGAGGGCAAACGCATCCCCTTCGGCTTCAAGCACCGCACGCTGCCGCACTTCATCAAGGATGACTACGGGCCCGAGAGCAGGGGCTTCGTGGAGAACTCGTACCTGGCCGGCCTGACGCCCACCGAGTTCTTCTTCCACGCCATGGGGGGCCGAGAGGGTCTCATCGACACAGCCGTCAAGACTGCTGAGACAGgCTACATCCAGCGGCGTCTCATCAAGTCCATGGAGTCGGTGATGGTGAAGTATGATGCCACGGTGCGTAACTCAATCAACCAGGTGGTGCAGCTGCGCTACGGCGAGGACGGGCTGGCCGGAGAGGCAGTGGAGTTCCAGAACATGGCCACACTGAAACCCTCCAACAAGGCCTTCGAGAAGAAGTTCAAGTTCGACTACACGAACGAGCGCGCTCTGCGGCGCACCCTGCAGGAGGATGTGCTGAAGGACGTGCTGACCAACGCACATGTGCAAGGCGAGCTGGAGCGCGAGTTCGAGCAGATGAAGGAGGACCGCGAGATCCTGCGCGCCATCTTCCCAACTGGAGACAGCAAGGTGGTGCTGCCCTGTAACCTAGCCAGGATGATCTGGAACGCGCAGAAGATCTTTCGCATCAACGTCCGCACCCCCACCGACCTCAACCCCCTGCGCGTGGTGGAAGGAGTGCAGGATCTGAGCAAGAAGCTGGTGATCGTGAACGGCGATGACCCCCTGAGCCGGCAGGCCCAGGAGAACGCCACGCTGCTCTTCAACATCCACCTGCGCTCCACGCTGTGCTCGCGCCGCATGACCGAGGAGTTCCGGCTCAGCACCGAGGCCTACGACTGGCTGCTGGGGGAGATCGAGACCAAGTTCAACCAGTCCATCGCCCACCCGGGCGAGATGGTGGGAGCGCTGGCCGCCCAATCCCTGGGGGAGCCAGCCACCCAGATGACCCTGAACACCTTCCACTATGCCGGTGTGTCGGCCAAGAACGTGACCCTGGGCGTGCCGCGACTCAAGGAGTTGATCAACATCTCCAAGCGGCCCAAGACCCCCTCGCTGACCGTCTTCCTGCTGGGCCAGGCCGCCCGGGATGCCGAGAGGGCCAAGGACATCCTGTGTCGGCTGGAGCACACCACCCTGCGCAAGGTGACCGCCAACACGGCCATCTACTACGACCCCAACCCGCAGAACACGGTGGTGACGGAGGACCAGGAGTGGGTCAACGTGTACTACGAGATGCCCGACTTCGATGTGACGCGCATCTCGCCCTGGCTGCTGCGCATCGAGCTTGACCGCAAGCATATGACCGACCGCAAGCTGACCATGGAGCAGATCGCCGAGAAGATCAATGCAGGTGAGCAGCGCCCCCTTCCTGCTTCCCCGCCTCCTACCCAGAGACGCAGGGAGGGACGGACGCACGCacgcagggagggagggaggcacgGAGGGACGCACGCacgcagggagggagggaggcacgGAGGGACGGACGCacgcagggagggagggaggcacgGAGGGACGGACGCACGCACGCAGGGAGGGAGGCACGGAGGGACGGACGCACGCACGCAGGGAGGGAGGCACGGAGGGACGGACGCACGCACGCAGGGAGGGAGGCACGGAGGGACGGACGGACAGACGCAGAGAGGGAGATCCCCTTCATCCTGTGCCCCCTCTTCACTCTGCTCTTCACTCTCCCCAGGCTTCGGAGATGATCTGAACTGCATCTTCAACGACGATAACGCTGAGAAGCTCGTCCTGCGCATCCGCATCATGAACAGCGACGAGAACAAGTTCCAGGAGGACGAGGAGGTGGTGGACAAGATGGACGACGACGTGTTCCTGCGCTGCATCGAGTCCAACATGCTGACGGACATGACGCTGCAGGGCATCGAGCAGATCAGCAAGGTGTACATGCACCTGCCGCAGACGGACAACAAGAAGAAGATCATTATCACGGAGGACGGCGAGTTCAAGGCGCTGCAGGAGTGGATCCTGGAGACGGACGGCGTGGGCCTGATGCGCGTGCTGAGCGAGAAGGACGTGGACCCCGTGCGCACCACGTCCAACGACATCGTGGAGATCTTCACGGTGCTGGGCATTGAGGCAGTGCGCAAGGCACTGGAGAGAGAGCTCTACCACGTCATCTCCTTTGACGGCTCCTATGTCAACTACCGCCACTTGGCCCTGCTGTGCGACACCATGACCTGCAGGGGCCACTTGATGGCCATCACCAGGCACGGGGTCAACCGGCAGGACACCGGGCCCCTGATGAAGTGCTCCTTTGAGGAGACGgTGGACGTGCTGATGGAGGCGGCGGCCCACGGGGAAAGCGACCCCATGAAGGGCGTGTCCGAGAACATCATGCTGGGCCAGCTGGCCCCCGCCGGCACTGGCTGCTTCGACCTGTTGCTGGACGCCGAGAAGTGCAAGTATGGCATGGAGATCCCCACCAACCTCCCCGGCATCAGCGTGGCAGGCCcCACTGGAATGTTCTTCGGCTCGGCGCCCAGCCCCATGGGTGGCATGTCACCAGCCATGACGCCCTGGAACCAGGGAGCCACCCCGGCCTATGGAGCCTGGTCCCCCAGCGTGGGAAGTGGAATGACCCCCGGTGCCGCCGGGTTCTCCCCCAGCGCGGCTTCGGATGCCAGTGGCTTCAGCCCCGGATACTCCCCGGCCTGGTCACCCACACCAGGCTCTCCTGGCTCTCCCGGGCCGGCCAGCCCCTACATCCCCTCGCCAGGTGGCGCCATccccacctcccccacctACAGCCTCACCAGCCCAGCCATCAGCCCGGACGACAGCGACGAGGAGAACTGA

Function

symbol description
polr2a Predicted to enable DNA binding activity; metal ion binding activity; and nucleotidyltransferase activity. Predicted to contribute to RNA polymerase II activity. Predicted to act upstream of or within transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II, core complex. Is expressed in blastomere. Orthologous to human POLR2A (RNA polymerase II subunit A).

NR:

description
PREDICTED: DNA-directed RNA polymerase II subunit RPB1

GO: NA

KEGG:

id description
K03006 RPB1, POLR2A; DNA-directed RNA polymerase II subunit RPB1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011703 True 4962 mRNA 0.63 27 2496064 2510692

Neighbor

gene id symbol gene type direction distance location
AMCG00011700 capgb,capg,LOC107665882,LOC107657288,LOC107556576,LOC107584402,LOC107733451 coding downstream 10334 2481091 ~ 2485730 (-)
AMCG00011699 NA coding downstream 22757 2468228 ~ 2473307 (-)
AMCG00011698 NA coding downstream 79468 2403971 ~ 2416596 (-)
AMCG00011697 eif5a,LOC107691471 coding downstream 102692 2387612 ~ 2393372 (-)
AMCG00011691 NA coding downstream 130070 2362204 ~ 2365994 (-)
AMCG00011709 NA coding upstream 81167 2591859 ~ 2599202 (-)
AMCG00011710 NA coding upstream 128771 2639463 ~ 2641522 (-)
AMCG00011707 LOC105907188,LOC103386604,LOC106608754,LOC103358028 coding upstream 145537 2656229 ~ 2656728 (-)
AMCG00011716 NA coding upstream 238502 2749194 ~ 2776484 (-)
AMCG00011715 NA coding upstream 274068 2784760 ~ 2785717 (-)
G132116 NA non-coding downstream 36103 2459748 ~ 2459961 (-)
G132078 NA non-coding downstream 48641 2415483 ~ 2447423 (-)
G131913 NA non-coding downstream 167082 2328597 ~ 2328982 (-)
G131909 NA non-coding downstream 168356 2327127 ~ 2327708 (-)
G131905 NA non-coding downstream 176066 2317940 ~ 2319998 (-)
G132129 NA non-coding upstream 811 2511503 ~ 2515213 (-)
G132137 NA non-coding upstream 39764 2550456 ~ 2551120 (-)
G132138 NA non-coding upstream 41666 2552358 ~ 2553259 (-)
G132151 NA non-coding upstream 123604 2634296 ~ 2634952 (-)
G132155 NA non-coding upstream 134881 2645573 ~ 2647388 (-)
G132117 NA other downstream 34314 2461107 ~ 2461750 (-)
G131863 NA other downstream 199611 2293633 ~ 2296453 (-)
AMCG00011648 LOC104949454,LOC101069368,LOC103480483 other downstream 631292 1849899 ~ 1864772 (-)
AMCG00011645 mpp1,vamp2,LOC106603197,LOC106523110,LOC107742350,LOC107720682,LOC107554313,LOC107082578,LOC107386619 other downstream 776838 1707717 ~ 1719226 (-)
AMCG00011640 NA other downstream 791065 1686309 ~ 1704999 (-)
G132140 NA other upstream 56053 2566745 ~ 2577837 (-)
AMCG00011711 neurl4,LOC106577658 other upstream 99036 2609728 ~ 2617328 (-)
AMCG00011708 slc25a35,LOC108245198,LOC102784467,LOC104950662 other upstream 131971 2642663 ~ 2643456 (-)
AMCG00011741 LOC107676000,LOC107586166 other upstream 659016 3169708 ~ 3173836 (-)
G132352 NA other upstream 690678 3201370 ~ 3207354 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004698 polr2a coding NC_007123.7 CM002896.2 22560067 ~ 22573297 (+)
grasscarp (Ctenopharyngodon idella) CI01000063_03808559_03820963 POLR2A coding CI01000063 null 3808275 ~ 3821730 (+)