AMCG00011707 (LOC105907188,LOC103386604,LOC106608754,LOC103358028)


Basic Information

Item Value
gene id AMCG00011707
gene name LOC105907188,LOC103386604,LOC106608754,LOC103358028
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 2656229 ~ 2656728 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011707
cAAATCAACAACTTCACGGTGGAGCTGCAGGCCAAGCCCGAGTACCACAAGTTCCTGATCGGCCGCGGTGGCGGCAACATCCGGCGCGTGAGGGACCGCACAGGCGCGCGCATCATCTTCCCCGCGGCCGACGACCACGAGCAGGAGCTCATCACCATTGTGGGCCGCGAGGAGGCGGTGCGGCAGGCGCAGAGGGAGCTGGAGACGCTCATCAGGAACCTGGACAATGTGGTGGAGGATGTGATGGTGGTGGAGCCGCGGTACCACCGGCACTTCGTGGCGCGGCGCGGCCAGGTGCTGCGGGAGATCGCCGAGGAGTACGGGGGCGTCACAGTGAGCTTCCCGCGCACCGGTGTGCAGAGCGACCGCGTCACCCTGAAGGGCGCCAAGGACTGC

Function

NR:

description
PREDICTED: vigilin-like

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011707 True 396 mRNA 0.67 2 2656229 2656728

Neighbor

gene id symbol gene type direction distance location
AMCG00011710 NA coding downstream 14707 2639463 ~ 2641522 (-)
AMCG00011709 NA coding downstream 57027 2591859 ~ 2599202 (-)
AMCG00011703 polr2a coding downstream 145537 2496064 ~ 2510692 (-)
AMCG00011700 capgb,capg,LOC107665882,LOC107657288,LOC107556576,LOC107584402,LOC107733451 coding downstream 170499 2481091 ~ 2485730 (-)
AMCG00011699 NA coding downstream 182922 2468228 ~ 2473307 (-)
AMCG00011716 NA coding upstream 92466 2749194 ~ 2776484 (-)
AMCG00011715 NA coding upstream 128032 2784760 ~ 2785717 (-)
AMCG00011721 NA coding upstream 163615 2820343 ~ 2846905 (-)
AMCG00011719 NA coding upstream 191839 2848567 ~ 2852523 (-)
AMCG00011720 NA coding upstream 201358 2858086 ~ 2863415 (-)
G132155 NA non-coding downstream 8841 2645573 ~ 2647388 (-)
G132151 NA non-coding downstream 21277 2634296 ~ 2634952 (-)
G132138 NA non-coding downstream 102970 2552358 ~ 2553259 (-)
G132137 NA non-coding downstream 105109 2550456 ~ 2551120 (-)
G132129 NA non-coding downstream 141016 2511503 ~ 2515213 (-)
G132166 NA non-coding upstream 68939 2725667 ~ 2726283 (-)
G132233 NA non-coding upstream 344309 3001037 ~ 3042256 (-)
G132261 NA non-coding upstream 421803 3078531 ~ 3089532 (-)
G132362 NA non-coding upstream 627093 3283821 ~ 3289291 (-)
G132392 NA non-coding upstream 763548 3420276 ~ 3432121 (-)
AMCG00011708 slc25a35,LOC108245198,LOC102784467,LOC104950662 other downstream 12773 2642663 ~ 2643456 (-)
AMCG00011711 neurl4,LOC106577658 other downstream 38901 2609728 ~ 2617328 (-)
G132140 NA other downstream 78392 2566745 ~ 2577837 (-)
G132117 NA other downstream 194479 2461107 ~ 2461750 (-)
G131863 NA other downstream 359776 2293633 ~ 2296453 (-)
AMCG00011741 LOC107676000,LOC107586166 other upstream 512980 3169708 ~ 3173836 (-)
G132352 NA other upstream 544642 3201370 ~ 3207354 (-)
AMCG00011745 NA other upstream 579411 3236139 ~ 3240000 (-)
AMCG00011765 NA other upstream 1213104 3869832 ~ 3879185 (-)
AMCG00011775 NA other upstream 1280756 3937484 ~ 3944519 (-)

Expression


Co-expression Network