AMCG00011709


Basic Information

Item Value
gene id AMCG00011709
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 2591859 ~ 2599202 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011709
ATGGATATCGGTGGTCTGGAGACGGTGGTGGCCAACTCGGCCTACGTCGCGGCGCGTGGCAGTGTGGATGGCAATGCGGCAGCCACCATGCGTGACAAGAAGATGCGCGCCAAACTCAAGCTGCCACACATCACTGTGTGCGAGCACATGAAGAGCACGGTGGACCAGAGCTTCGAGGTCATGTGCATCAAGATGCCCATCGGCAAGCGGCTCCTGCAGCAGTACCTGGAGTCCGAGGACTTGCTGAAGACGGCAGGCAACCTGTGGAAAGACATCGAGGACTACAGCACGGCCGAGGAGAAGGACCGTGCGCAGAAGGCCCAGAAGATGGTCAACAAGTACTACGACTCGGCCTCCAAGAACTTCTGCAGCTTCCTGGAGGAGAAAGCCATCTCGCGGGTCAAGGAGGACCACAAGAACTGTCGGGCGGACCTGTTCAAGGAGTCGGAGCAGCAGTTGCTCAAGCACCTGGAGAACAAGGCCCTGGAGGGCTTTAAGGGCAGCTTGTACTTCCTGCGTTATCTGCAGTTCAAGTGGCTTGAGGCGCAGTCGGTGACGGAAGAGTGGTTCATGGACTTCCGTGTGCTGGGCAAGGGCGGCTTTGGGGAGGTGCACGCCTGCCAGATGAAGGCCACTGGCAAGATGTATGCCAACAAGAAGCTCAACAAGAAGAGGTTGAAGAAGCGCAAGGGCTACGAGggGGCCATCGTGGAGAAGCGGATCCTGGCGAAGGTGCACAGCCGCTTCATTGTGACGCTGGCCTACGCCTTCCAGACCAAGAACGACCTGTGTCTGATCATCTGTGGCCTGGAGCATCTGCACCAGAACCGGATCATCTACCGGGACCTGAAGCCAGAGAACGTGCTTCTGGATGATGCAGATCTGGGTCTGGCCATTGAGCTGAAGGATGGTCTGAACAAGACGAAAGGATACGCGGGGACCCCAGGTCAGTCACTCCGATTGTCCAGTCAGAACGAGGAGTATGACTACTGTGTAGACTACTTCACCTTGGGGGTTACGCTGTACGAGTTGGTCGCCGCCAAGGGGCCCTTCAGGAGTCGTGGAGAGAAGGTGGAGAACAAGGAGGTGACCCGGCGGATCCTGAACGACCCCGTCTCGTACCCAGACAAGTTCAGCGCCAACCTGAAGGCCTTGTGTGAGGCGCTGATGGAGAAGGACCCGGCCAAGAGGCTGGGCTTCAAGGACAACGAGTGCATGGACCTCAAGAACCACGTCTTCTTCAAGACCATCAACTGGGGCCGCCTGGAGGCAGGTCTGCTGCCGCCTCCGTTCGTCCCGGACCCCAAGATGGTGTATGCCAAGGACATCGACGATGTCGGCGCCTTCAGTACCATCAAGGGTGTGGTGCTGGACGAAAAGGACAAGGAGTTCTATGATGACTTCTCCACCGGCAACATCCCCATCCCCTGGCAGGATGAGATGATCGAGACGGGGGTCTTCGGAGAGCTGAACCAGTGGGGCCCCAAGGGCTCCACGCCCAACGACCTCAACCCCAACTACGTGCCAGAGACCACCAATGATTCAGCGACCCTTCTCAAGTTCCTGCCCACGGGATCCGTGAGTCTGAAGCTGTATACCACGGCCGAGGGGCAACATTGTCCAGCGCCCTACCTGGGCCTGGGAACAGCATGGCATGAGGCCAGACACCAGGGTCACACCAGCTATGCAAGGACTAGAACCATCCTCGAAGACTGTATGGACCGGCGCTGTGCTGTCCTGGACTGTGGCCTGGTCACTGCATCGGAGTAG

Function

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0050254 rhodopsin kinase activity molecular_function
GO:0004703 G protein-coupled receptor kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011709 True 1770 mRNA 0.58 8 2591859 2599202

Neighbor

gene id symbol gene type direction distance location
AMCG00011703 polr2a coding downstream 81167 2496064 ~ 2510692 (-)
AMCG00011700 capgb,capg,LOC107665882,LOC107657288,LOC107556576,LOC107584402,LOC107733451 coding downstream 106129 2481091 ~ 2485730 (-)
AMCG00011699 NA coding downstream 118552 2468228 ~ 2473307 (-)
AMCG00011698 NA coding downstream 175263 2403971 ~ 2416596 (-)
AMCG00011697 eif5a,LOC107691471 coding downstream 198487 2387612 ~ 2393372 (-)
AMCG00011710 NA coding upstream 40261 2639463 ~ 2641522 (-)
AMCG00011707 LOC105907188,LOC103386604,LOC106608754,LOC103358028 coding upstream 57027 2656229 ~ 2656728 (-)
AMCG00011716 NA coding upstream 149992 2749194 ~ 2776484 (-)
AMCG00011715 NA coding upstream 185558 2784760 ~ 2785717 (-)
AMCG00011721 NA coding upstream 221141 2820343 ~ 2846905 (-)
G132138 NA non-coding downstream 38600 2552358 ~ 2553259 (-)
G132137 NA non-coding downstream 40739 2550456 ~ 2551120 (-)
G132129 NA non-coding downstream 76646 2511503 ~ 2515213 (-)
G132126 NA non-coding downstream 92679 2492343 ~ 2499180 (-)
G132116 NA non-coding downstream 131898 2459748 ~ 2459961 (-)
G132151 NA non-coding upstream 35094 2634296 ~ 2634952 (-)
G132155 NA non-coding upstream 46371 2645573 ~ 2647388 (-)
G132166 NA non-coding upstream 126465 2725667 ~ 2726283 (-)
G132233 NA non-coding upstream 401835 3001037 ~ 3042256 (-)
G132261 NA non-coding upstream 479329 3078531 ~ 3089532 (-)
G132140 NA other downstream 14022 2566745 ~ 2577837 (-)
G132117 NA other downstream 130109 2461107 ~ 2461750 (-)
G131863 NA other downstream 295406 2293633 ~ 2296453 (-)
AMCG00011648 LOC104949454,LOC101069368,LOC103480483 other downstream 727087 1849899 ~ 1864772 (-)
AMCG00011645 mpp1,vamp2,LOC106603197,LOC106523110,LOC107742350,LOC107720682,LOC107554313,LOC107082578,LOC107386619 other downstream 872633 1707717 ~ 1719226 (-)
AMCG00011711 neurl4,LOC106577658 other upstream 10526 2609728 ~ 2617328 (-)
AMCG00011708 slc25a35,LOC108245198,LOC102784467,LOC104950662 other upstream 43461 2642663 ~ 2643456 (-)
AMCG00011741 LOC107676000,LOC107586166 other upstream 570506 3169708 ~ 3173836 (-)
G132352 NA other upstream 602168 3201370 ~ 3207354 (-)
AMCG00011745 NA other upstream 636937 3236139 ~ 3240000 (-)

Expression


Co-expression Network