AMCG00011715


Basic Information

Item Value
gene id AMCG00011715
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 2784760 ~ 2785717 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011715
ATGAGACACCAGCCGACGGAGCTGCACCCCCCGCAGGCGGAGACTTGCGCCCCCTCGCACGGCAGACCCTTTGCCCCCCGCCCCATGGCGCTGGGCCCCCTCCAGCTGATGCGCACCCTGCGCGACTCCCCGGCCGCGCTGCGCCGCAAGTTCAGCCGCGACCGCACCGAGAGCCTGTCCCACGGGGACCCCCTGTTCAAAGTGCACTACCTGGGCACGGAGAAGATCTACTCCCTGGAGCCCGAGCAGGCCGAGGCGGCCATCGGGCGGCTGCTGGAGGGGGCGCCGCCGCGCAAGCTGGGCAAGGACCACGCGCTGGTGGTGCGGCCGCGCTATGTGGAGGTCAAGGAGATCGCCACGGGCCGCCAGCTCACCAAGACCTACCTGCAGGACATCGCCTACTGCGCCGCCGACTCGGCCCACCCCAATGTCTTCCTGTACATCTGCAAGCAGCGGGCGCAGCAGCTGCAGTGCCGCGTGTTCTGGTGCAGCCGGGCGGAGCGGGCGCGGGAGATGACCGCCTGCCTGGCGCGCTCCTTCCAGAGGGCGCTGTGCGATCTGCAGCAGCCGCCGGCCCCACCCACCACCGCCCCGGGAGAAGAGCTGGAGGGAGAGGGCTGTCCCGGGTGTCCGCCCCCCGAGCCGAGGAGCTCGGTCACGCTGCCGGCAAACTTCGGCAAAGTCCGCTGGAAGAAGAGGACGACCCACAGCCCCCTGAAGACCATGTCTAGGAGACTGACCGCGGGGGACCGCCGCTCTTGGGTCTGA

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0061982 meiosis I cell cycle process biological_process
GO:0006950 response to stress biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0033554 cellular response to stress biological_process
GO:0051321 meiotic cell cycle biological_process
GO:1903046 meiotic cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006281 DNA repair biological_process

KEGG:

id description
ko03460 Fanconi anemia pathway
ko01524 Platinum drug resistance

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011715 True 768 mRNA 0.71 2 2784760 2785717

Neighbor

gene id symbol gene type direction distance location
AMCG00011716 NA coding downstream 8276 2749194 ~ 2776484 (-)
AMCG00011707 LOC105907188,LOC103386604,LOC106608754,LOC103358028 coding downstream 128032 2656229 ~ 2656728 (-)
AMCG00011710 NA coding downstream 143238 2639463 ~ 2641522 (-)
AMCG00011709 NA coding downstream 185558 2591859 ~ 2599202 (-)
AMCG00011703 polr2a coding downstream 274068 2496064 ~ 2510692 (-)
AMCG00011721 NA coding upstream 34626 2820343 ~ 2846905 (-)
AMCG00011719 NA coding upstream 62850 2848567 ~ 2852523 (-)
AMCG00011720 NA coding upstream 72369 2858086 ~ 2863415 (-)
AMCG00011722 NA coding upstream 78956 2864673 ~ 2870960 (-)
AMCG00011728 fis1,LOC106577644 coding upstream 91559 2877276 ~ 2885423 (-)
G132166 NA non-coding downstream 58477 2725667 ~ 2726283 (-)
G132155 NA non-coding downstream 137372 2645573 ~ 2647388 (-)
G132151 NA non-coding downstream 149808 2634296 ~ 2634952 (-)
G132138 NA non-coding downstream 231501 2552358 ~ 2553259 (-)
G132137 NA non-coding downstream 233640 2550456 ~ 2551120 (-)
G132233 NA non-coding upstream 215320 3001037 ~ 3042256 (-)
G132261 NA non-coding upstream 292814 3078531 ~ 3089532 (-)
G132362 NA non-coding upstream 498104 3283821 ~ 3289291 (-)
G132392 NA non-coding upstream 634559 3420276 ~ 3432121 (-)
G132395 NA non-coding upstream 655678 3441395 ~ 3457472 (-)
AMCG00011708 slc25a35,LOC108245198,LOC102784467,LOC104950662 other downstream 141304 2642663 ~ 2643456 (-)
AMCG00011711 neurl4,LOC106577658 other downstream 167432 2609728 ~ 2617328 (-)
G132140 NA other downstream 206923 2566745 ~ 2577837 (-)
G132117 NA other downstream 323010 2461107 ~ 2461750 (-)
G131863 NA other downstream 488307 2293633 ~ 2296453 (-)
AMCG00011741 LOC107676000,LOC107586166 other upstream 383991 3169708 ~ 3173836 (-)
G132352 NA other upstream 415653 3201370 ~ 3207354 (-)
AMCG00011745 NA other upstream 450422 3236139 ~ 3240000 (-)
AMCG00011765 NA other upstream 1084115 3869832 ~ 3879185 (-)
AMCG00011775 NA other upstream 1151767 3937484 ~ 3944519 (-)

Expression


Co-expression Network