AMCG00011727


Basic Information

Item Value
gene id AMCG00011727
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 2954437 ~ 2962627 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011727
CAGAGAGCAGCCGCCCGCTCGCGCActgtggagaggagaggaggtcGCGTGCGGGTGAGTCTGCTGTTTCTTTACTGCctccacatacatacatacatacatgcatacatgcacacacacacacacaggccgaGCTCAGCAGTGCAGGACACCCCAGCGAAGCGTCTGTTCTGTCGCATGACGTAGCCCACGCTTTCCAGCTGGGTGCAGTGGATGCGTCTCTTCCGGAAAGCAGGCGCCTCATCGTTAGGTTTAGTTTCATTCTGCCGAGAATAGTCGGTCAGTAACGACTTCTATTCCAGTTGCGTTGTGACAAGTGCATCCAGCTGGGTGCGCAGTGTAGGTTTCACAGCAGCGCCCACGTGTGGCCAGAGCGGAAAACACGCCGGAGCGACTAACTGTGAACCGGTCATgGAACTGGAACAGgttaaactgaaaaaacagaaaaataaacaaaaAATGGAGCCCATGAGCACGGCAGACACTGCGCCACTGCCAGACCCAACCATGGACTCAGGAAAGTCACACCTGGATGCCACGCAGCCGGTAGAAGCCCACGCTCCTgaGCAATTTCTCCCCAGAGgcagagacctggaaaacagcCCTCCCACCAGGCAATCGCTTCCTGACCAAGAGGAGCCCGTGAACGACGTTTCTACAGAGATGGTGCCCCTTGCTGTGAAAGAGCAGGAAAACGGCTGTTGCTCTGAGGTTGTCCCTGCTGGACAGCAGTCCAGTTCTGGTTTAATGAGCACGATGTCTTGGGTTAGCCAAGTCCGTGAGTTCGCTTCATCGTTTGGCGGTGGCCTGGACAAGCCGAAGGAGGACCTGGCCCGGGCCTGTCAGACGCTCTACATGCTCATGGAGACGTACGCCACTACCACCAACAAGGCTCGGGATGTCGTCAACCAGCACTTCAACACTGACatcccccccttccccttccaCCAGGACCGGAGCCTGCGGGAGCACGTGGAGCTGGTGAGAGGGACCGTGGGACACATCTATCGGGAGCCCGAGCTGACGCACAAGCACGTCCAGTCCAAGCTGGAGCCGTCGATGTACGCCAAGATCAGATACGCTGGCGTCTCGTGGAAGGAGAAGATGGAGATCATCAAGGAGCTCGATGAGAAGTACATGGGTCTGCTGGGCAGTGTGAGCGCCCCACTGATCGCCGTGCTGCTGGTGAAGAGCGGCGTGGGGGAGAGTGCCCTCCCGCCCCCTGCCGACCTCCAGCTTCCTGCCGTGCTCCCGCCCCTCGCCGTCCCCCGGGGTCCGGACGTCCTCGACCTGCGTGTGGACGATCTGCTGAAGAGCAGCGAGTGGGTGTGTAAAACTCTGACCGGGGGCAAGAGCAAGAGCGACTACGAGCgcgccatccagctggtccagGAGACTGTCGACGTGTTCCGGCCGCACTGCGAGGGCTACGCCGACGTCATCAGCGAAGTGCGGGCCTACGTTGCGATGGTGGCGGAAAGCCTGGAGAAGTGATCGGCAGACAGGAGGGGGAGGCGGAAGAAGGGTAGTTTTATAAACGAATGTCCCCCGAATTATCTCCCCCGTTATCAAAAAACGCAACCGTTTCCAAACTCTTTATACCGTGGAGATATAGAGGTTTCACTTTAGTTGtgcttgaaaataattattttattgatctcTAACAATAGAGGTAGGCAGagacttttgcttttgttgttacTGAGCGAGTTACCCCTCCTCCATGAGCTTGACATGTACATTTGGGTCACTCGAGCACCAAACATTATTAGAATACCATAAAATCATAACCTTGTGAATGCGTGTCCTGTTTAAGAGGTATATCTCGGATTGTAGTAGTCTTGCTGTGGTTTCCAAtgtgaacaataaataaacattcacaaaaaaaatgtgcctGTCTGATTGTAT

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011727 True 1908 mRNA 0.55 11 2954437 2962627

Neighbor

gene id symbol gene type direction distance location
AMCG00011726 NA coding downstream 8544 2938292 ~ 2945893 (-)
AMCG00011729 NA coding downstream 32206 2919841 ~ 2922231 (-)
AMCG00011731 NA coding downstream 44518 2900649 ~ 2909919 (-)
AMCG00011725 NA coding downstream 54588 2896690 ~ 2899849 (-)
AMCG00011732 NA coding downstream 64151 2885651 ~ 2890286 (-)
AMCG00011730 NA coding upstream 12924 2975551 ~ 2984794 (-)
AMCG00011734 NA coding upstream 93289 3055916 ~ 3065952 (-)
AMCG00011742 NA coding upstream 174358 3136985 ~ 3138296 (-)
AMCG00011748 NA coding upstream 237060 3199687 ~ 3201575 (-)
AMCG00011746 NA coding upstream 240925 3203552 ~ 3207354 (-)
G132166 NA non-coding downstream 228154 2725667 ~ 2726283 (-)
G132155 NA non-coding downstream 307049 2645573 ~ 2647388 (-)
G132151 NA non-coding downstream 319485 2634296 ~ 2634952 (-)
G132138 NA non-coding downstream 401178 2552358 ~ 2553259 (-)
G132137 NA non-coding downstream 403317 2550456 ~ 2551120 (-)
G132233 NA non-coding upstream 38410 3001037 ~ 3042256 (-)
G132261 NA non-coding upstream 115904 3078531 ~ 3089532 (-)
G132362 NA non-coding upstream 321194 3283821 ~ 3289291 (-)
G132392 NA non-coding upstream 457649 3420276 ~ 3432121 (-)
G132395 NA non-coding upstream 478768 3441395 ~ 3457472 (-)
AMCG00011708 slc25a35,LOC108245198,LOC102784467,LOC104950662 other downstream 310981 2642663 ~ 2643456 (-)
AMCG00011711 neurl4,LOC106577658 other downstream 337109 2609728 ~ 2617328 (-)
G132140 NA other downstream 376600 2566745 ~ 2577837 (-)
G132117 NA other downstream 492687 2461107 ~ 2461750 (-)
G131863 NA other downstream 657984 2293633 ~ 2296453 (-)
AMCG00011741 LOC107676000,LOC107586166 other upstream 207081 3169708 ~ 3173836 (-)
G132352 NA other upstream 238743 3201370 ~ 3207354 (-)
AMCG00011745 NA other upstream 273512 3236139 ~ 3240000 (-)
AMCG00011765 NA other upstream 907205 3869832 ~ 3879185 (-)
AMCG00011775 NA other upstream 974857 3937484 ~ 3944519 (-)

Expression


Co-expression Network