AMCG00011741 (LOC107676000,LOC107586166)


Basic Information

Item Value
gene id AMCG00011741
gene name LOC107676000,LOC107586166
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3169708 ~ 3173836 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011741
ATGGCGTCGCTTTTATTCTGCGGACCCAAGCTCGCCGCCTGCGGGATCGTCCTCAGTATTTGGGGGGTCATCATGCTGgtGATGCTGGGCATCTTCTTCAATGTCCACTCTGCAGTGCTGATCGAAGATGTGCCCTACACGGAGGCCGACATACTAAATGACTCAAACCCTCCTCAGACGGTGTACGGCCTGTATGACCAGGTCAGCTACAACTGCTTCATCGCGGCTGGCATCTACGTGCTGCTGGGCGGCCTGTCCCTTTGCCAGGTCCGGCTGAACAAGCGCAAGGAGTACATGGTGCACTAA
>TU165963
CTTCAGCCATTTCGCGTCCGTTCATACAATCGACCTTGGCGACGTCACACTGACGTCACCCCACCGCTCAGCTGACGAGTTCGGCTGTCACATGACTGCTCGCCGTGGAGTGTACCATGTGCTGGGAGGTGGAAGGGCGCAGGAGGATGTAAATTCCCTTGCTGTAGGCTGTATGGATTTTAACAACGGTACACACGGCGTCGAATACACAATTGCTGAACAGTAATATTCAATTTGTCATACcacaaatgttacaataaataatgtcaCATTATATATTCCGAGGAACGCTCCTGCTTTCTGAGTGGAGGAGTCCGGGTTTGGATCGATCCAAGTACAGAGGTGTTTCTGTTATCTTTGCAAACATCAACACAACCATATTCTTCAAGTGCATCTACGTGTATAACTATAGGTGggtgattacattttaattaattgtattttggatgCTCAGATCAATTTGTCTGTCTGCGAGGGCTGCTTACTGCGTTTTCTATTCgccttccctccccctcttttaTGATGGCAGACACCCAACCGGTTCGAGCCGAGTGTGTACGGAAATAACCGAGGTCCGAGTCCGGAATCGGATCAGCTGAAATGCGGTAGAGAAGGGTCGGGTGTTGCAGCTTCTCTCTGACGGCACATCGGACACCTACAGATCCGCAGGAAAAGACAACTAACTGCACAAGAAGAGGGGACTCCACCCGTGCATCTGCAGCCATGGCGTCGCTTTTATTCTGCGGACCCAAGCTCGCCGCCTGCGGGATCGTCCTCAGTATTTGGGGGGTCATCATGCTGgtGATGCTGGGCATCTTCTTCAATGTCCACTCTGCAGTGCTGATCGAAGATGTGCCCTACACGGAGGCCGACATACTAAATGACTCAAACCCTCCTCAGACGGTGTACGGCCTGTATGACCAGGTCAGCTACAACTGCTTCATCGCGGCTGGCATCTACGTGCTGCTGGGCGGCCTGTCCCTTTGCCAGGTCCGGCTGAACAAGCGCAAGGAGTACATGGTGCACTAACGCCCCCTGGTGGCTCGGCACGGCTCGCAGGAtccggacacacacacacacacacacacacacacacacacacacactcactcactcactccaataaacatgcacacatgcacagacaaaCACTTTCGAATCCAGTGCTCTCCAGCCCAGTGGGTTTTTAAACCTCAGCCCTTCAAGTTCAGCCCGTTTGCTAAAGACTGGGTGTGCGGTGATCCGGTCAGGGTAGTTCCAAACCCTCGCCGTCGCCTACGACCGGACCAGACTGCTCCACTCCTGGCGTGTCAGCCGATCACGGTGACGGCGTTTTCCCCGTCTTTAGAAATCGAGGATTTTAAGGGGTGACTTACAAGACCTGACCTCCTTCCCCCCTGTAAATCGTATCCCTCCCTTTCATGTTACAAAGATTGGGAGCACACTGGACCAAATGGATATTAATTGGTTGTAAATGTATCGTTATAAAAGACCTATTAATACGGCAAAATTGTAGCTAGTGTCAGATTGGGCCAATAaaccctattattattattgttattgttataaaaACCGAAGATAATTGGCATCTTGGAAGTTTTATATAAATACGTCAATCTGATTGGTACTTTAAATGACTTGTGTGTGATATGATTGGTTAACAGAAACCTTGCATTCTGGGTGGGCAGGTTTGGGGTGAGTCTCGAGTCTTGGGACATGACCTTGTGACCTCCAGGACATCTACCCAAACTGGGCATCCCTTTAGGAGAAATGCACCTCCagctattgttgttgttgtagttgttgttattattataataagatCTCATGTGTTGCAGTGGTTGCGCTCAAGGTCTTCTCATTGGAAGTCACCAGGAAGGTCAGTTTCTATAAACCCAGATTCTCACGTATTACCCAGGATGCTCTCTGCCTAGTCcaccatttttatatataaataaaaatgggacTTGAGGTTGAACCATGGAGTCAGtgtggaaagagagagatcagggaggtagtggggggggggggggggggggggggggggggggtgacgcCATGATAAACACACCGCGCATGAGGGAGACTATAGGTTCTGTTAATATTATGGTTATTGTTGAAGTCAGTTTGAACAAGGATATTTATTATTCGTGAAGTTGAAAGAAAATTAAGCCCACACAAGTCTAGTCCATTGTCGAGACTCTTCCCCCACCACCGATGTGTAATACTGAagattttctgtaaaatgttgtgCTGCAAATCCAATGTGGTGTTTGTGTTCAGtgactgttctctctctctctata
>TU165964
CTTCAGCCATTTCGCGTCCGTTCATACAATCGACCTTGGCGACGTCACACTGACGTCACCCCACCGCTCAGCTGACGAGTTCGGCTGTCACATGACTGCTCGCCGTGGAGTGTACCATGTGCTGGGAGGTGGAAGGGCGCAGGAGGATGTAAATTCCCTTGCTGTAGGCTGTATGGATTTTAACAACGGTACACACGGCGTCGAATACACAATTGCTGAACAGTAATATTCAATTTGTCATACcacaaatgttacaataaataatgtcaCATTATATATTCCGAGGAACGCTCCTGCTTTCTGAGTGGAGGAGTCCGGGTTTGGATCGATCCAAGTACAGAGGTGTTTCTGTTATCTTTGCAAACATCAACACAACCATATTCTTCAAGTGCATCTACGTGTATAACTATAGACACCCAACCGGTTCGAGCCGAGTGTGTACGGAAATAACCGAGGTCCGAGTCCGGAATCGGATCAGCTGAAATGCGGTAGAGAAGGGTCGGGTGTTGCAGCTTCTCTCTGACGGCACATCGGACACCTACAGATCCGCAGGAAAAGACAACTAACTGCACAAGAAGAGGGGACTCCACCCGTGCATCTGCAGCCATGGCGTCGCTTTTATTCTGCGGACCCAAGCTCGCCGCCTGCGGGATCGTCCTCAGTATTTGGGGGGTCATCATGCTGgtGATGCTGGGCATCTTCTTCAATGTCCACTCTGCAGTGCTGATCGAAGATGTGCCCTACACGGAGGCCGACATACTAAATGACTCAAACCCTCCTCAGACGGTGTACGGCCTGTATGACCAGGTCAGCTACAACTGCTTCATCGCGGCTGGCATCTACGTGCTGCTGGGCGGCCTGTCCCTTTGCCAGGTCCGGCTGAACAAGCGCAAGGAGTACATGGTGCACTAACGCCCCCTGGTGGCTCGGCACGGCTCGCAGGAtccggacacacacacacacacacacacacacacacacacacacactcactcactcactccaataaacatgcacacatgcacagacaaaCACTTTCGAATCCAGTGCTCTCCAGCCCAGTGGGTTTTTAAACCTCAGCCCTTCAAGTTCAGCCCGTTTGCTAAAGACTGGGTGTGCGGTGATCCGGTCAGGGTAGTTCCAAACCCTCGCCGTCGCCTACGACCGGACCAGACTGCTCCACTCCTGGCGTGTCAGCCGATCACGGTGACGGCGTTTTCCCCGTCTTTAGAAATCGAGGATTTTAAGGGGTGACTTACAAGACCTGACCTCCTTCCCCCCTGTAAATCGTATCCCTCCCTTTCATGTTACAAAGATTGGGAGCACACTGGACCAAATGGATATTAATTGGTTGTAAATGTATCGTTATAAAAGACCTATTAATACGGCAAAATTGTAGCTAGTGTCAGATTGGGCCAATAaaccctattattattattgttattgttataaaaACCGAAGATAATTGGCATCTTGGAAGTTTTATATAAATACGTCAATCTGATTGGTACTTTAAATGACTTGTGTGTGATATGATTGGTTAACAGAAACCTTGCATTCTGGGTGGGCAGGTTTGGGGTGAGTCTCGAGTCTTGGGACATGACCTTGTGACCTCCAGGACATCTACCCAAACTGGGCATCCCTTTAGGAGAAATGCACCTCCagctattgttgttgttgtagttgttgttattattataataagatCTCATGTGTTGCAGTGGTTGCGCTCAAGGTCTTCTCATTGGAAGTCACCAGGAAGGTCAGTTTCTATAAACCCAGATTCTCACGTATTACCCAGGATGCTCTCTGCCTAGTCcaccatttttatatataaataaaaatgggacTTGAGGTTGAACCATGGAGTCAGtgtggaaagagagagatcagggaggtagtggggggggggggggggggggggggggggggggtgacgcCATGATAAACACACCGCGCATGAGGGAGACTATAGGTTCTGTTAATATTATGGTTATTGTTGAAGTCAGTTTGAACAAGGATATTTATTATTCGTGAAGTTGAAAGAAAATTAAGCCCACACAAGTCTAGTCCATTGTCGAGACTCTTCCCCCACCACCGATGTGTAATACTGAagattttctgtaaaatgttgtgCTGCAAATCCAATGTGGTGTTTGTGTTCAGtgactgttctctctctctctata
>TU165965
CTTCAGCCATTTCGCGTCCGTTCATACAATCGACCTTGGCGACGTCACACTGACGTCACCCCACCGCTCAGCTGACGAGTTCGGCTGTCACATGACTGCTCGCCGTGGAGTGTACCATGTGCTGGGAGGTGGAAGGGCGCAGGAGGATGTAAATTCCCTTGCTGTAGGCTGTATGGATTTTAACAACGGTACACACGGCGTCGAATACACAATTGCTGAACAGTAATATTCAATTTGTCATACcacaaatgttacaataaataatgtcaCATTATATATTCCGAGGAACGCTCCTGCTTTCTGAGTGGAGGAGTCCGGGTTTGGATCGATCCAAGTACAGAGGTGTTTCTGTTATCTTTGCAAACATCAACACAACCATATTCTTCAAGTGCATCTACGTGTATAACTATAGACACCCAACCGGTTCGAGCCGAGTGTGTACGGAAATAACCGAGGTCCGAGTCCGGAATCGGATCAGCTGAAATGCGGTAGAGAAGGGTCGGGTGTTGCAGCTTCTCTCTGACGGCACATCGGACACCTACAGATCCGCAGGAAAAGACAACTAACTGCACAAGAAGAGGGGACTCCACCCGTGCATCTGCAGCCATGGCGTCGCTTTTATTCTGCGGACCCAAGCTCGCCGCCTGCGGGATCGTCCTCAGTATTTGGGGGGTCATCATGCTGgtGATGCTGGGCATCTTCTTCAATGTCCACTCTGCAGTGCTGATCGAAGATGTGCCCTACACGGAGGCCGACATACTAAATGACTCAAACCCTCCTCAGACGGTGTACGGCCTGTATGACCAGGTCAGCTACAACTGCTTCATCGCGGCTGGCATCTACGTGCTGCTGGGCGGCCTGTCCCTTTGCCAGGTCCGGCTGAACAAGCGCAAGGAGTACATGGTGCACTAACGCCCCCTGGTGGCTCGGCACGGCTCGCAGGAtccggacacacacacacacacacacacacacacacacacacacactcactcactcactccaataaacatgcacacatgcacagacaaaCACTTTCGAATCCAGTGCTCTCCAGCCCAGTGGGTTTTTAAACCTCAGCCCTTCAAGTTCAGCCCGTTTGCTAAAGACTGGGTGTGCGGTGATCCGGTCAGGGTAGTTCCAAACCCTCGCCGTCGCCTACGACCGGACCAGACTGCTCCACTCCTGGCGTGTCAGCCGATCACGGTGACGGCGTTTTCCCCGTCTTTAGAAATCGAGGATTTTAAGGGGTGACTTACAAGACCTGACCTCCTTCCCCCCTGTAAATCGTATCCCTCCCTTTCATGTTACAAAGATTGGGAGCACACTGGACCAAATGGATATTAATTGGTTGTAAATGTATCGTTATAAAAGACCTATTAATACGGCAAAATTGTAGCTAGTGTCAGATTGGGCCAATAaaccctattattattattgttattgttataaaaACCGAAGATAATTGGCATCTTGGAAGTTTTATATAAATACGTCAATCTGATTGGTACTTTAAATGACTTGTGTGTGATATGATTGGTTAACAGAAACCTTGCATTCTGGGTGGGCAGGTTTGGGGTGAGTCTCGAGTCTTGGGACATGACCTTGTGACCTCCAGGACATCTACCCAAACTGGGCATCCCTTTAGGAGAAATGCACCTCCagctattgttgttgttgtagttgttgttattattataataagatCTCATGTGTTGCAGTGGTTGCGCTCAAGGTCTTCTCATTGGAAGTCACCAGGAAGGTCAGTTTCTATAAACCCAGATTCTCACGTATTACCCAGGATGCTCTCTGCCTAGTCcaccatttttatatataaataaaaatgggacTTGAGGTTGAACCATGGAGTCAGtgtggaaagagagagatcagggaggtagtgggggggggggtgacgcCATGATAAACACACCGCGCATGAGGGAGACTATAGGTTCTGTTAATATTATGGTTATTGTTGAAGTCAGTTTGAACAAGGATATTTATTATTCGTGAAGTTGAAAGAAAATTAAGCCCACACAAGTCTAGTCCATTGTCGAGACTCTTCCCCCACCACCGATGTGTAATACTGAagattttctgtaaaatgttgtgCTGCAAATCCAATGTGGTGTTTGTGTTCAGtgactgttctctctctctctata
>TU165967
CTTCAGCCATTTCGCGTCCGTTCATACAATCGACCTTGGCGACGTCACACTGACGTCACCCCACCGCTCAGCTGACGAGTTCGGCTGTCACATGACTGCTCGCCGTGGAGTGTACCATGTGCTGGGAGGTGGAAGGGCGCAGGAGGATGTAAATTCCCTTGCTGTAGGCTGTATGGATTTTAACAACGGTACACACGGCGTCGAATACACAATTGCTGAACAGTAATATTCAATTTGTCATACcacaaatgttacaataaataatgtcaCATTATATATTCCGAGGAACGCTCCTGCTTTCTGAGTGGAGGAGTCCGGGTTTGGATCGATCCAAGTACAGAGGTGTTTCTGTTATCTTTGCAAACATCAACACAACCATATTCTTCAAGTGCATCTACGTGTATAACTATAGACACCCAACCGGTTCGAGCCGAGTGTGTACGGAAATAACCGAGGTCCGAGTCCGGAATCGGATCAGCTGAAATGCGGTAGAGAAGGGTCGGGTGTTGCAGCTTCTCTCTGACGGCACATCGGACACCTACAGATCCGCAGGAAAAGACAACTAACTGCACAAGAAGAGGGGACTCCACCCGTGCATCTGCAGCCATGGCGTCGCTTTTATTCTGCGGACCCAAGCTCGCCGCCTGCGGGATCGTCCTCAGTATTTGGGGGGTCATCATGCTGgtGATGCTGGGCATCTTCTTCAATGTCCACTCTGCAGTGCTGATCGAAGATGTGCCCTACACGGAGGCCGACATACTAAATGACTCAAACCCTCCTCAGACGGTGTACGGCCTGTATGACCAGGTCAGCTACAACTGCTTCATCGCGGCTGGCATCTACGTGCTGCTGGGCGGCCTGTCCCTTTGCCAGGTCCGGCTGAACAAGCGCAAGGAGTACATGGTGCACTAACGCCCCCTGGTGGCTCGGCACGGCTCGCAGGAtccggacacacacacacacacacacacacacacacacacacacactcactcactcactccaataaacatgcacacatgcacagacaaaCACTTTCGAATCCAGTGCTCTCCAGCCCAGTGGGTTTTTAAACCTCAGCCCTTCAAGTTCAGCCCGTTTGCTAAAGACTGGGTGTGCGGTGATCCGGTCAGGGTAGTTCCAAACCCTCGCCGTCGCCTACGACCGGACCAGACTGCTCCACTCCTGGCGTGTCAGCCGATCACGGTGACGGCGTTTTCCCCGTCTTTAGAAATCGAGGATTTTAAGGGGTGACTTACAAGACCTGACCTCCTTCCCCCCTGTAAATCGTATCCCTCCCTTTCATGTTACAAAGATTGGGAGCACACTGGACCAAATGGATATTAATTGGTTGTAAATGTATCGTTATAAAAGACCTATTAATACGGCAAAATTGTAGCTAGTGTCAGATTGGGCCAATAaaccctattattattattgttattgttataaaaACCGAAGATAATTGGCATCTTGGAAGTTTTATATAAATACGTCAATCTGATTGGTACTTTAAATGACTTGTGTGTGATATGATTGGTTAACAGAAACCTTGCATTCTGGGTGGGCAGGTTTGGGGTGAGTCTCGAGTCTTGGGACATGACCTTGTGACCTCCAGGACATCTACCCAAACTGGGCATCCCTTTAGGAGAAATGCACCTCCagctattgttgttgttgtagttgttgttattattataataagatCTCATGTGTTGCAGTGGTTGCGCTCAAGGTCTTCTCATTGGAAGTCACCAGGAAGGTCAGTTTCTATAAACCCAGATTCTCACGTATTACCCAGGATGCTCTCTGCCTAGTCcaccatttttatatataaataaaaatgggacTTGAGGTTGAACCATGGAGTCAGtgtggaaagagagagatcagggaggtagtggggggggggggtgacgcCATGATAAACACACCGCGCATGAGGGAGACTATAGGTTCTGTTAATATTATGGTTATTGTTGAAGTCAGTTTGAACAAGGATATTTATTATTCGTGAAGTTGAAAGAAAATTAAGCCCACACAAGTCTAGTCCATTGTCGAGACTCTTCCCCCACCACCGATGTGTAATACTGAagattttctgtaaaatgttgtgCTGCAAATCCAATGTGGTGTTTGTGTTCAGtgactgttctctctctctctatatatatatatatatatatatatataggtatattgtaaaataaactgttcaaTTG

Function

NR:

description
PREDICTED: ribonuclease kappa-B-like

GO:

id name namespace
GO:0009303 rRNA transcription biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004521 endoribonuclease activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011741 False 306 mRNA 0.57 3 3171038 3173113
TU165963 True 2306 TUCP 0.48 3 3169761 3173836
TU165964 False 2189 TUCP 0.48 4 3169761 3173836
TU165965 False 2168 TUCP 0.48 5 3169761 3173836
TU165967 False 2222 TUCP 0.47 5 3169708 3173836

Neighbor

gene id symbol gene type direction distance location
AMCG00011742 NA coding downstream 31412 3136985 ~ 3138296 (-)
AMCG00011734 NA coding downstream 103756 3055916 ~ 3065952 (-)
AMCG00011730 NA coding downstream 184914 2975551 ~ 2984794 (-)
AMCG00011727 NA coding downstream 207081 2954437 ~ 2962627 (-)
AMCG00011726 NA coding downstream 223815 2938292 ~ 2945893 (-)
AMCG00011748 NA coding upstream 25851 3199687 ~ 3201575 (-)
AMCG00011746 NA coding upstream 29716 3203552 ~ 3207354 (-)
AMCG00011747 NA coding upstream 37888 3211724 ~ 3214816 (-)
AMCG00011744 NA coding upstream 68364 3242200 ~ 3253579 (-)
AMCG00011751 NA coding upstream 169598 3343434 ~ 3348414 (-)
G132261 NA non-coding downstream 80176 3078531 ~ 3089532 (-)
G132233 NA non-coding downstream 127452 3001037 ~ 3042256 (-)
G132166 NA non-coding downstream 443425 2725667 ~ 2726283 (-)
G132155 NA non-coding downstream 522320 2645573 ~ 2647388 (-)
G132151 NA non-coding downstream 534756 2634296 ~ 2634952 (-)
G132362 NA non-coding upstream 109985 3283821 ~ 3289291 (-)
G132392 NA non-coding upstream 246440 3420276 ~ 3432121 (-)
G132395 NA non-coding upstream 267559 3441395 ~ 3457472 (-)
G132434 NA non-coding upstream 394051 3567887 ~ 3568440 (-)
G132482 NA non-coding upstream 454926 3628762 ~ 3702912 (-)
AMCG00011708 slc25a35,LOC108245198,LOC102784467,LOC104950662 other downstream 526252 2642663 ~ 2643456 (-)
AMCG00011711 neurl4,LOC106577658 other downstream 552380 2609728 ~ 2617328 (-)
G132140 NA other downstream 591871 2566745 ~ 2577837 (-)
G132117 NA other downstream 707958 2461107 ~ 2461750 (-)
G131863 NA other downstream 873255 2293633 ~ 2296453 (-)
G132352 NA other upstream 27534 3201370 ~ 3207354 (-)
AMCG00011745 NA other upstream 62303 3236139 ~ 3240000 (-)
AMCG00011765 NA other upstream 695996 3869832 ~ 3879185 (-)
AMCG00011775 NA other upstream 763648 3937484 ~ 3944519 (-)
G132642 NA other upstream 990795 4164631 ~ 4166439 (-)

Expression


Co-expression Network