AMCG00011810


Basic Information

Item Value
gene id AMCG00011810
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5166168 ~ 5219056 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011810
TGCTCCCTTCGGAAGATCCCTCTCACTCGTCCCACACTGCAGAATGTGTCTGCCCCTGTGATTGACATCAGGCAGGTGACAGGGCAGCTGTGGCGCCAAGGACCCCTAGCTTTGTCAGACTCTGCTGAAGCGAGCCACAGAGAAAATCCCCATTGGGGATCTGAAGGTGGAACGACAAGCCACGGATCCCAAAGAAAGATGGCAGAAAACAATCTCTTCTGTCCTCTCATTCAGCAAATGATCAACCATTCAGTGAATTCCAACAACTCTGACAGTAGCATTAACTACACAACGGTCTGCCTGCATGGCATCTTGTCCGTTTTCGGGATCCTGGAGAACATTCTGATCCTGTGGGTCATCGGGTTCCGCGTCCGCCGGACCGTCATCAGTGTCTGGATCCTCAATTTGGCCGCTTCCGACCTGCTGGCCACCGTCTCCCTGCCGTTCTTCACCCACTTCCTGGCGATGGGCCACACCTGGACCTTGGGCACCACCTTCTGCAAGATCCACTCATCCATGTTCTTCCTCAACATGTTTGTGAGCGGCTTCCTGCTGAGCGTAATCAGCCTTGATCGCTGCCTGGTGGTCATTCTCCCCGTGTGGTCCCAGAATCACAGGGACGTGCGCTTGGCCACTCAGGTGTGCGCTGGGATTTGGGTGCTGGCCATTATCAACACCATTCCGTATTACATCTTCCGGGACACTATCGTGAGGAAGGACGGGAGGATCATGTGCTACTACAACTACGTGCAGTACCGGTCCCCCGACGACGAAATTGACCAGCTGTGTGGGGTAAGGCAAGACATCCTGGCTGTCAGCAAGTTTATCATATCCTTCCTATTACCCCTGATTATAATCATAGGCAGCTACATGGCTGTCAGCTCCAGCATCACCAGACGGGGCCGGAGGCGTACCTATCGATTTTTCCGGCTTGTATTAGCAGTGATCATCACGTTTATCGTGTGCTGGATCCCATATCACATCTTCAGCCTACTGGAGGCCGCCTCCCACTATCACCATAGCCTGCGATTGGTTGTCGCCAGGGCCCTCCCTCTGGTCAGCAGCCTGGCCTTCATCAACAGCGTGCTCAACCCCTTCCTGTACGTCTTCAGCTGCCCCGACTTCATGGCCAAGATCCGCCAGTCCCTCAGCGTGGTGATGGAGAGCGTGCTGATGGAGGACATGGACTTCAGCCACCGGCGCAGCACAACGCGCTCCTCCGTCAGCACCAGCGAGCTGCTGAGCCGCGGGCAGAAACTCCGCGGGCATCGTGAGAAGTTGGGCAGCActgagaaggaggaggagaaccCGGCCGTTTTCTGATGGCTTCCCGGTGACGGGGCGGGATCTTCCAAGTCTAGTGACTATTGTTTGCAGTAAGAACAAATCAATTAGTGTGCAGTAATATGCTATGAAGTCATTACTGTACGGCAAATTTAACTCTTCAATTGAGTTGTCCTCTTGATTTGTGTAAATCTAAAGTTGATCAGTGGCcaatataatatatgtttttgtacagggagaataaaatacttttttaagtaATGAAAAATGCACCTCGAGACAGAATTGCACAGGTTAGTCTTTTCTGAGATTTTCCACTTTTGGATTgtactgttgttattatttttattttacttcatacATTGTATGCATTTTGCTTATGCAGCTACTCATCTTTCCCCTCtatcagttcaatcaactgcaTGAAACGTTTTCCTTATAGAAGGTAATACACCTTCATCTGTTTCTCTGAGATAAGAAACATGATGCCCATGAACTGCAACATCTCCATCTTTGTGCTTGAAAATAAACAGCGTCTCTCAGAGCATGACTGGATTGTGTGTTGGAAATCGAGCCTCGCTTACAACCACACGATGCTCAATCTCACATGTATGCATCGCAAGCATAGCCCATCCCCCCGCATTCAGGTTAACCTCAGTGCGTGTGCTGATGAGGCAGGAACATGAACATCAAGGTGCACATGGATAAAGATCATTCGCCGGCCCTGTTTACCGAGAAGTGTAATCTGGCATGGTGCCCAGGAGGTAATGAAAGctgcatttttaatgattatgAATAATGCTGTGCACCATGGTTGTTGCAATAGAAAcctgtgtgtttaatatatatatgtatagcacACCACATCAATAGACTTTCCATATTGTAAAGCAGAAACAAGTTTTTtattcgccctggataagggcatctgccaataaataaataaataaataaataaataataataataataataataataataataataataataataaaccttatAAATAGTGATTAGGGAAgtattgtgcatgttttttagaattttttcaGTCAATAGTTTAGTCATGTgcttttgaaatttgaaatccCTCATTGCTTTATAGTAATGCACTGCTCCCTGATGGCAATACATGTTACTGCTCTCTCAAATGACAAGGAAATATTCTGTAAGACATAAAGCGCACAAAATAGCATCATTAGTAAGATCTAGTCCTGGACTGCTTAACTATCTGTATTGGTTAAATGGCTTTAGGCATAATGTTGTATACAATACACCAGAGAATGTGGAAAgatattgattaaaatatatttcatcaGTCATGTTGAGTGTTTTGGATTTTGGTAAATTTACAGTGATAATTTTATCACATAATGTCCATATTTTGGCAGAATTAAAATCTGTGCTTAACTATgctacatatatttatgttaaacTAACCTCAAGTCCAGCACATTTTAATGATAACATGAGAAGTGCAGTAAGCTGAAGTAGGTAGAAAATGTTCATAAATACAGCCCATGGTGTCAAACAACCTTTATACCAGCAGTTTGATtctcactaaataaataaaacaatatcaaacaaATAAGAATATGCTCCATCTGTCTGCTTTAAGACACAAAGGAACAGGGAGCCTGCAGACGTTCAATTTCTGAATGTactttgtttattaatgaatgTCACCTGTACAGAGTGAACAGGTAAAAGTGAAGGAGGTAAAGAAGAAGTCTGTCTATTAGCGTGCTATCTTTCTTCCCCCAAACAATCATTGCAGGCAAGTGACTTCCAGTTTAAACttcatataacatttttttaattttctctctctgaacTGAATCCTGAATCTTACCATATTCGGCTCAACAGACTAACAGTTATTTGCCAGATTAGTAGAAAAGGCAGGAGATGTGAAACTCTTCAATGGATAGGACCTGCCTTTGAAACACATTAGTCTAAACTATACTGcactattttatttcaaatgcaaatccTTGCACCCTTGTattcatgtatattattattatgagtatttattgcttggcagatgcccttatccagggcaacttacagaaTATAAGCACAAAGtataatacaaagtgcaaaaatacagttcagtccaaggcataaaacattacaaattcagatgtacataatacagtgcaattcaaagcataatacattttacaaattccaatttacacaagtgaatacaataaatgacgtCTAACATCCTGGAGtgtaaaagctaagtgcggaCAAGATGTTCATCTCATTAGAATACTCCTGCTGAAATagggtttaaaattaatatgtaaataattgaGGTTTCACaaaaattcattaaaattacattgcaaCTATATCCGTATTGTGTGCTTTTTCATGAATGTATAATTTGACATAGATGTTCTTCTTCACTTATCTTTATTGACACACTCACATATGTTTGGAAGagcacatgtataaatataatttaagggCAATTGTAACAGAAATGGCATTTTATGTTTACTTCatagatatttttgtattaaaaataaaaaacatttttaaaagtacttaaatgtgtaaactcattattttattggaaAATTGTATACATAAGTAGGTGCGTTACAACTTAAGTATAAGTATATGAACACATGAAACATAAACACTTAACTGGAAGGAATGCAAAAACAGTCAATGACCATTTTGCGCCAGAATTATATCATCACTTTCTGTAATCACACAGCAAATGTATGTCctaatgaaatgcaatgtaattCATCCTTTGAAAGTATGGTGTGATTCAGACAAACAATGGGTCGTTGGCCGGCAAGGAAACAGGCAGGAGGTCAGTTGATTATGTGAACAAGGCAAAGAGGGAAATGCAAGAGACATTGGTCACAAATGGGCAAAGGTCAATAACAAGATAGGTCTGGAACACTCAGTAGAGGTGCTGGAATGGCAAACTAGACTTCACATTGGTTGGTGGGAACAACGGGGAATACATACTAGTGTTGATGAGCAGGAGAATATGAGACAGGTGTGGCGATGATTCAGTTAAGCAGGGACAATAATAGAATAATTAGGTACCAGGAGATCCAGGGAAAGACACAGAGGATGCTTTGGTAATagcgacctctggtggcgaaccTGGGGATGGTTGAGCTGTGGATGTAACATATGGcctaagtatatattttttaaaagatgtttaatcgcagcagaaataaaataaatacaaatctaatttaaataaatagtaagtCTGCTCTCCCTACAGATGCGATGCCACAAAAGCAGTTataaacatttcttaatttcagaTAAGAAAGTATATAGgaagtaaaacaagaaaaaggtgTTTTAGGTGgtttaacacatttgtacatttcccCATGGTgaacaaaacatgtatacacTAAAAAGCtcaataattatgaataaaattatatatttatgattattatcatgGCAACTGTATTTGTGACTTAAAATCCATTGTCCGTGCATGGTTGTTATTGTCAAGTCATGAATAAAgcagcactttattattattattattattattattattattattattattattattattatatagggGAAGAAGTAATCCACACAGAAAATAACTCATGTC

Function

GO: NA

KEGG:

id description
K06715 PTGDR2, GPR44, CD294; prostaglandin D2 receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011810 True 4916 mRNA 0.40 3 5166168 5219056

Neighbor

gene id symbol gene type direction distance location
AMCG00011809 NA coding downstream 32624 5127605 ~ 5133544 (-)
AMCG00011802 NA coding downstream 358479 4805890 ~ 4807689 (-)
AMCG00011797 NA coding downstream 385678 4778329 ~ 4780490 (-)
AMCG00011798 NA coding downstream 396364 4766530 ~ 4769804 (-)
AMCG00011800 NA coding downstream 420632 4745240 ~ 4745536 (-)
AMCG00011818 NA coding upstream 142281 5361337 ~ 5399035 (-)
AMCG00011822 NA coding upstream 183589 5402645 ~ 5460948 (-)
AMCG00011821 NA coding upstream 309227 5528283 ~ 5529716 (-)
AMCG00011827 NA coding upstream 417065 5636121 ~ 5638116 (-)
AMCG00011825 NA coding upstream 424657 5643713 ~ 5646448 (-)
G132862 NA non-coding downstream 2357 5162185 ~ 5163811 (-)
G132833 NA non-coding downstream 96501 5040983 ~ 5069667 (-)
G132819 NA non-coding downstream 146745 5018963 ~ 5019423 (-)
G132759 NA non-coding downstream 315166 4850720 ~ 4851002 (-)
G132747 NA non-coding downstream 354310 4811547 ~ 4811858 (-)
G132977 NA non-coding upstream 412038 5631094 ~ 5631526 (-)
G133076 NA non-coding upstream 634881 5853937 ~ 5854156 (-)
G133080 NA non-coding upstream 637607 5856663 ~ 5857165 (-)
G133147 NA non-coding upstream 677683 5896739 ~ 5897003 (-)
G133156 NA non-coding upstream 706573 5925629 ~ 5973380 (-)
AMCG00011811 NA other downstream 15955 5142465 ~ 5150213 (-)
G132788 NA other downstream 161559 5004165 ~ 5004609 (-)
G132712 LOC105024602,LOC106563375,LOC105902387,LOC107564776 other downstream 571719 4593693 ~ 4594449 (-)
AMCG00011792 NA other downstream 673611 4482151 ~ 4492557 (-)
G132693 NA other downstream 689189 4474605 ~ 4476979 (-)
AMCG00011812 NA other upstream 71118 5290174 ~ 5328724 (-)
G133026 NA other upstream 482030 5701086 ~ 5703917 (-)
G133032 smyhc1,LOC100136150,LOC103364123,LOC103375112,LOC101484004,LOC102294892,LOC102297239,LOC103482310,LOC106963427,LOC103135328 other upstream 488227 5707283 ~ 5793845 (-)
AMCG00011831 smyhc2,LOC107560354,LOC108436074,LOC108436073,LOC102297239,LOC102201055,LOC101483728,LOC103396567 other upstream 488337 5707393 ~ 5720981 (-)
AMCG00011845 LOC107680223,LOC107589804,LOC107688458,LOC107722552,LOC107088600,LOC103479335,LOC102208621,LOC105941235,LOC103147024,LOC108229072,LOC106514905,LOC107384191,LOC106590239 other upstream 522157 5741213 ~ 5760549 (-)

Expression


Co-expression Network