AMCG00011812


Basic Information

Item Value
gene id AMCG00011812
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5290174 ~ 5328724 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011812
GAATTACTGGATATTTCTGTCTGAAGCCTTGGGTGCCATTTTGTAACAGATGTTACTTCTTCTCAACTGATGAGATGAACTGGAAAAGCAGTCGTGATAACTGTTCATCAATGCAAGGACACCTTGTCATCATAGAGACTGCAGAGGAGCAGTTGATGACAAGAAGCTTctaTTGGAGTGACAATCAGCCTGATAACTATGATAAATATTCTGATACATCTGAGGTGGAGCACTGTGCAATGATGAGGGAAATCGATGGTTTAAATAACTGGAATGATGCATTGTGTTCACACAATAAAGGGAGGGTGTGTGAGAAGGAAGCTGAGAATCTGgagacagat
>TU166640
TAATATGAATGCAGAAATATTCTCTTTGGGCTTCATACATATGGATATACTGTAACTATTAAAAGCGGGTCATATGACCTACAACTCTGAAAGTTTTACGGTCAGTAGGTTTTTATTCTCTGATCAGAGACCACCAATACTAATTCAGTTTTAGCTTATTCTGTTTTCATAGTAAACTTACTTTTTCAAATGGCTGAGTATTTGTGTGTACAATGATGCATTGAAAGTCATAATCTGAGgttattaatttacaaaacagaagTGGTCTGTGGACTAAATCAGGGAACTTCCTCAAAAACCAACAAGTTAGTTAGAAACAACGTTATCAATCTGAAAGCTAATTTAAACCGTTTCTTCAGAGTGGTTGACACACACTAGTGCAAGTAAATGGATGTCTTGTACGCCCAAGTGAATTTTTCCAATAAGAAGGGGAAAGAGCACAAGCTGGGTGACACAGCAGaacatGAAGTTACTTTCTCTGAAGTTCAGACTGCTGGACAGAATTCCTCACAGTCACCCATAGTACCAGACAATACTCCCCCTAAGACAGCTGAGGGTCAAGCTGCCTCCAGACCTTATCTGACAATATCGCTTGCAGTCCTGTGCTGTTTGTTGGCAGCGATAATTATTGCACTTGCTGTTTTGCTTTACAGAATCCACAAAGAAGACTAATGCGGAAGAGATTTCACAACTTAAGGAAGAAGACAAACTGCTATTGCAACTaaatatattactaattcaaTCTAACAAAAGTGCAGATGAATGGAGGAAACACAGTGTGTCTTGCAACGCATCTCTAAATGaagaaaatcaaaatgtgaaGACATGCACTGAGAAACTACAAAATGGAATTACTGGATATTTCTGTCTGAAGCCTTGGGTGCCATTTTGTAACAGATGTTACTTCTTCTCAACTGATGAGATGAACTGGAAAAGCAGTCGTGATAACTGTTCATCAATGCAAGGACACCTTGTCATCATAGAGACTGCAGAGGAGCAGATTCAGATCCCTTAGGACTTGGTCTTGATTCAGACTTGGTCTTGGACTAGGATTGTCCTGGTCTTGATCTTGACTTGAGCTCAGATAAGGTGGTCTCGACTCCCATGGGAAACCCAATACT
>TU166644
GTTTCTATTGATTGTTTTAGGATTAAGTCCTggacaaaatcaaaaatgttattcacccaataaactaaataaacactgtgttgtatttttattttgcatgtggtgggtgggtcaatgtttagAAAAGTTTTATGGAAACTtaaaccttttcattttcatttcatattgatattttaaCAGCTAACAAAAGTGCAGATGAATGGAGGAAACACAGTGTGTCTTGCAACGCATCTCTAAATGaagaaaatcaaaatgtgaaGACATGCACTGAGAAACTACAAAATGGAATGACTGGATATTTCTGTCGGAAGCCTTGGATGCCATTTCATAACAGATGTTACTTCTTCTCAGCTGAGGAGATGAACTGGACCAGCAGTCGTGATAACTGTTCATCAATGCAAGGACACCTTGTCATCATAGAGACTGCAGAGGAGCAGGATAGTCCTGGTCTTGGTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011812 False 341 mRNA 0.41 3 5302359 5306933
TU166640 True 1121 lncRNA 0.39 7 5306497 5328724
TU166644 False 457 lncRNA 0.37 3 5290174 5325922

Neighbor

gene id symbol gene type direction distance location
AMCG00011810 NA coding downstream 71118 5166168 ~ 5219056 (-)
AMCG00011809 NA coding downstream 156630 5127605 ~ 5133544 (-)
AMCG00011802 NA coding downstream 482485 4805890 ~ 4807689 (-)
AMCG00011797 NA coding downstream 509684 4778329 ~ 4780490 (-)
AMCG00011798 NA coding downstream 520370 4766530 ~ 4769804 (-)
AMCG00011818 NA coding upstream 32613 5361337 ~ 5399035 (-)
AMCG00011822 NA coding upstream 73921 5402645 ~ 5460948 (-)
AMCG00011821 NA coding upstream 199559 5528283 ~ 5529716 (-)
AMCG00011827 NA coding upstream 307397 5636121 ~ 5638116 (-)
AMCG00011825 NA coding upstream 314989 5643713 ~ 5646448 (-)
G132862 NA non-coding downstream 126363 5162185 ~ 5163811 (-)
G132833 NA non-coding downstream 220507 5040983 ~ 5069667 (-)
G132819 NA non-coding downstream 270751 5018963 ~ 5019423 (-)
G132759 NA non-coding downstream 439172 4850720 ~ 4851002 (-)
G132747 NA non-coding downstream 478316 4811547 ~ 4811858 (-)
G132977 NA non-coding upstream 302370 5631094 ~ 5631526 (-)
G133076 NA non-coding upstream 525213 5853937 ~ 5854156 (-)
G133080 NA non-coding upstream 527939 5856663 ~ 5857165 (-)
G133147 NA non-coding upstream 568015 5896739 ~ 5897003 (-)
G133156 NA non-coding upstream 596905 5925629 ~ 5973380 (-)
AMCG00011811 NA other downstream 139961 5142465 ~ 5150213 (-)
G132788 NA other downstream 285565 5004165 ~ 5004609 (-)
G132712 LOC105024602,LOC106563375,LOC105902387,LOC107564776 other downstream 695725 4593693 ~ 4594449 (-)
AMCG00011792 NA other downstream 797617 4482151 ~ 4492557 (-)
G132693 NA other downstream 813195 4474605 ~ 4476979 (-)
G133026 NA other upstream 372362 5701086 ~ 5703917 (-)
G133032 smyhc1,LOC100136150,LOC103364123,LOC103375112,LOC101484004,LOC102294892,LOC102297239,LOC103482310,LOC106963427,LOC103135328 other upstream 378559 5707283 ~ 5793845 (-)
AMCG00011831 smyhc2,LOC107560354,LOC108436074,LOC108436073,LOC102297239,LOC102201055,LOC101483728,LOC103396567 other upstream 378669 5707393 ~ 5720981 (-)
AMCG00011845 LOC107680223,LOC107589804,LOC107688458,LOC107722552,LOC107088600,LOC103479335,LOC102208621,LOC105941235,LOC103147024,LOC108229072,LOC106514905,LOC107384191,LOC106590239 other upstream 412489 5741213 ~ 5760549 (-)
G133075 NA other upstream 523156 5851880 ~ 5852590 (-)

Expression


Co-expression Network