AMCG00011856


Basic Information

Item Value
gene id AMCG00011856
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5936640 ~ 5939193 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011856
CGGGGGTGCCTCAGAGAACAGATATGTGGCAGTAAGGTGTCACAGAAGCTGATCAACAACAGTTTAATACAGCGACAGAGAGGGGAGTCAACACAGACATACTGGACAACactataagtgtgtgtgtggtgggggggttgagaGTTATTCACACAAACTGATTTTTCAAATGTTGCTTCTGAGTGAGAATTCAATAAACCAGTCAGCACTTACGCTGGCCTGTCACACGGAGGGAGGCGTTCACAGTTTGTGTCTCAAACTGTACTGGGGGGGGCTGTGTCAGACTTTGACAGGTTAATGAGCTTCACAACCCAGAGGCAAAtaacacacctacacacacagcTTAAATCAGAGCGGAGAGCAGGGGAGACAGCTAGTATCTGGATTACTACTGAGAGACACTGCGGCCAGACACACTTGGACAGAGACGCACTGCGGCCAGACGCACTCGCAGACTGACAgccggagagagagaaacacggACGACAGACCACAGAACTCATTGCCCCCACGGACACGGGCGGGATGGTGCGCTCCGAGCGCCAGTGGCAGGTGCCCCTATGCGTCTCTCTGCCCATCGAGCTGCTGGAGGCTGAGGAGCCATTCCCCTTCCTGGACACAACGCTGACCGACCTGGGCATCACCCCGGCGTCGGTGCAGGAGCGTGTAGTGTGGATGGACAGCAGACGCACGCGTGTGCGGGGCCGGGGGGGGAAGCTGCGGGAGCGCGaggtgctgctgctggaggtgCGTGTGCGAGCACAGCGGCCCGGGGACCCGCGCAGCCAGGAGGTGCTGTACAGCACCGAGACGCACACGGACCGCCAGTACTGCCGCAGCACCGTGTCCATACTGCCATGGAGACACAGCCACAGTGagggGGTGCCAGTGATCAGTGACAAAGAGCCCCTGGAGATGGTGGCTGCTGTGGATACTGAATCCCACCCTAAATGGCAGAAGATAGAGGAGAGACGAGAGATGAATCGACCCACTGACACACCGAGGTGGGAGGGGCAACAAGGGAAATTCATAGGCTGA

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0052547 regulation of peptidase activity biological_process
GO:0051336 regulation of hydrolase activity biological_process
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011856 True 1038 mRNA 0.58 4 5936640 5939193

Neighbor

gene id symbol gene type direction distance location
AMCG00011858 NA coding downstream 43560 5889044 ~ 5893080 (-)
AMCG00011841 NA coding downstream 90108 5844281 ~ 5846532 (-)
AMCG00011848 NA coding downstream 103285 5826036 ~ 5833355 (-)
AMCG00011847 tm9sf1 coding downstream 117977 5811975 ~ 5818663 (-)
AMCG00011840 NA coding downstream 125990 5802295 ~ 5810650 (-)
AMCG00011859 NA coding upstream 1457 5940650 ~ 5946920 (-)
AMCG00011857 NA coding upstream 41900 5981093 ~ 5986961 (-)
AMCG00011866 NA coding upstream 82520 6021713 ~ 6028050 (-)
AMCG00011871 slc7a8,LOC104932911,LOC103358414,LOC102238406,LOC107753926 coding upstream 114891 6054084 ~ 6057440 (-)
AMCG00011870 LOC106608857,LOC105020553,LOC105894166,LOC101077604,LOC107588204,LOC106577803,LOC104932911 coding upstream 118300 6057493 ~ 6063479 (-)
G133147 NA non-coding downstream 39637 5896739 ~ 5897003 (-)
G133080 NA non-coding downstream 79475 5856663 ~ 5857165 (-)
G133076 NA non-coding downstream 82484 5853937 ~ 5854156 (-)
G132977 NA non-coding downstream 305114 5631094 ~ 5631526 (-)
G132862 NA non-coding downstream 772829 5162185 ~ 5163811 (-)
G133180 NA non-coding upstream 49921 5989114 ~ 5990502 (-)
G133181 NA non-coding upstream 53121 5992314 ~ 6035898 (-)
G133186 NA non-coding upstream 59415 5998608 ~ 5999229 (-)
G133209 NA non-coding upstream 140653 6079846 ~ 6080079 (-)
G133277 NA non-coding upstream 331994 6271187 ~ 6347713 (-)
AMCG00011842 NA other downstream 64640 5860396 ~ 5872000 (-)
G133075 NA other downstream 84050 5851880 ~ 5852590 (-)
G133032 smyhc1,LOC100136150,LOC103364123,LOC103375112,LOC101484004,LOC102294892,LOC102297239,LOC103482310,LOC106963427,LOC103135328 other downstream 142795 5707283 ~ 5793845 (-)
AMCG00011860 NA other upstream 15437 5954630 ~ 5957925 (-)
G133183 NA other upstream 53221 5992414 ~ 5993018 (-)
AMCG00011868 NA other upstream 76717 6015910 ~ 6017080 (-)
AMCG00011867 NA other upstream 96726 6035919 ~ 6040630 (-)
G133208 NA other upstream 139177 6078370 ~ 6079367 (-)

Expression


Co-expression Network