AMCG00011857


Basic Information

Item Value
gene id AMCG00011857
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5981093 ~ 5986961 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011857
TGCAGTTCGCGTTGTgatgtgattattttttcaatgtcttAACTTGAACATGAGGACGATTGATCGTTTCCTGgcatatgtgtaaatataaagtCCACTTGCTTTTATCCCGCTTACCGTGACCGCTGACAGGGTCCCACAAGACAATCCACTACAGTACTACACAATACATAGGGAAGACTCCACCTCGTATCCAGACACTCGCAATGAGAGACTGAGACAATTTAACAGAATTGTCTTTAGTCTCTTTACTGCACTGcaacagagagtgagagaagtcagtgaaagcagagagaaagagagagatggggggcgAGACCAAGTTGAAAGGCGGgaaggacaaagagagagggaggaagagcgGGAAGAAGGGTGGTGGAGCAAGGCAGGATCGGGGGAGTAAACAGTGGCCGCGGCTGGACAATCTCAGCGTGGGGTATTTCCGCAGGGTGAACGACAGGCTGGAAGAGGCGTTCGGCCCTAAAGAGGAGATGgACATGTTCGTGGAGAATGTCTTATCTGAGATCAAGGGGCGGGCTGCCATTGTGGCCACAGACATGATTGGCAGTGTGACCCTACAGAAGCTCCTCCCCCTGGCCAGCCCTGCCCAGGTGGGAGGGGTCCTGGCCGAGCTGGGGGGCGACTCGGGGGCGGAGTTCGCCGCCGTGTCATGTGACCGGTGTGGGGCGCACGTCCTAGAGAGCGCGCTCAGACAGGCTCACAGACTGACAGGGGATGGTGGGAAAGCGGAGGACCAGGAAGCTGCCTCAGAGGCGGAGGGTGCTGCCCAGGGCGGGTGTGAGGTTCTGGAGGAGCAGCTGCTGTTGCTGAGCAATGCGGTGATGGACAGGCTGACGGAGGTCGCCCGGGACACCCACGGGACGTTCGTGGCTCGCAGGATCGCCATGACGCTGGCAGGATCACTCGGGCACAGCGACCGAAAGACAGCGCCTCACCCAGGGCATGATGCAATACCTGACGACTCTCGGCGCTGCACCCGGGACGAGGACCAGACATCCAGCCGCCTCCTGGAGACCCTCATCACCGTGTCCCAAAAGTCCCAGCTCCGCGACCTCTACAAGAACCACTTCCGGGGTCACCTGTTCCTGAAGATTTTTGACGAGCTGTTAGAGGGTCTGGAAGCCATCTTGGCGGCGGGTCACATGGGTGTCATCGTCCAATTAGCGGAGAGCTGCGTCAGAAAGGAGGAGCGGCAGTCCCAGATGATGCAAAGCCTACTGGAGGTTCGGAGGAATCATTGCAGCACACACcgCCCCCTCTCTGGAGTGACGTATCACGGCTCCTGCCTCGTCCAGTCACTGCTCTCCTACTCAGACAGCTCCGTCCTCCAGGTCTCCCTCAGGGCCCTGCCCCCCAGCGACCTCCTGACCCTGGCAACCGACCAGTCGGGGAGCCACGTGCTGGAGGCTCTGGTGACGTCGCTGACCGAGAAGGGGAGGATCAAAATGCTGAGGAGGCTGAAGggtgtcTACGTGCAGATGGCGTGCTCTAAGTTTGGCAGTCGTGCTCTGGAGAGTGTGTGGAGCAGCGCGTCCCTCAGGACAAGGCAGGGCATCGCACAGGAACTGGtggGCAGCAAGGCCACCCTCAGGTCAGACCAGTTCGGTCACCACGTGTTCCGGAACTTCGCCCTGACTCACTTCCTGAAGAGGCGGGACCAGTGGGAGGAGCTCCAGACAGCCCAATCCAAGAAGAGAATGATgttcagtgacattttaaagtgacGGGAGatatcttttgtatttttattctaattttTTCTGTCTGCAGATCTGTTTCTATAATAAGTCATAATAACCAGTCTAAGAACAAACAATTATGTCTCACTGTGTCTGTTACttgtgtatataattttatttcgCATAGACTGTCcagcattttatatattaatcacATTCTCTCGCACACCCACACGCCTCAGTCAGGGTTCAAGCGATGGCATCGCTGTGGCTCATTGCATACTTGCGTTGATGTTTATTTGGTCTTACAAATACAAGAGTGGTTTGAAATTCCAGTGTCTAATATTAATACAGCATTAAAACGatcaacaacagaaataaacaggaCTGGACTCGTTTCCACAGTCCCCAGGCCCCTTTCCAAAACCATACAGCTCTTGCCATTATCTCCTGAACGACAACACGGCGAGATCAAAGCCACCATCTTGGCCAGGGGCGTAACCATCCTCCTCCGTCGAATTCCGATTGTGCGTTATGTCCGTTTTCCGTTGCTGTTGTCGGCTGTCCCGTTCCCCGTCACACGTTCCCATTGGCGGGCGAGGCCAGTTCGGCGATCTTGGCGTTCAGCTCCTGATTGGTCCAGTCCCTCCTGATGTCGTCCAGGTGGCTGTCGAAATCGACCAAGAGGTTGTGGGTCCCGGACGCCAGCAGCTCATTGGCTATCGCCCGCGTCTGCTCCCAGTGGCGCAGCATGATCTGTTGTTTGTCCTTCAGTGTCCAGTGTCCGTCCCTCCTCTCGTACACCACAATGGGCGGCAGTCTCTCTTGCATGGACATCTTGGCACTCTGCACCTACACACAaggAACTGCATTACTGTAGTGCTCTGCAATCTTATCTGCAATCTTCACTGCACACGGAgtgggactGCTGTCAGTCATGCTAGCATTGGCCTGGTAGTATCCCACAATCCTCAGCTTCTTCTGTGCGCACCACACATCCAcCTGCTGCAGGGCGAGCTCGGTGATGGGGGCGAGGGGCAGGCGGGAGTGCAGCAGGGGCACGCAGTCCGACACGCACACGGATCCCCCCTGAGGCCCCGGGGACAGGAGCAGCCCGTTCACAGAGCATGCTGGGAAGCGTCCGGCATGCAGGAACATCTTCACATAGCTCATACAGGAGAGCTCCACCTCCatcgCGGATGTCTGTCTGCGGTCACAGCTGTATCAGAGCGACAATGTGACGAAGTCTCGGCGATCCAGCTGTGAAGTCACCGGCGCCATTAAACCCAACACAGAGCCGCAACACTGTATCAGCCTCCAGAACCCCCGAGATCTGCCCGGCAACAGCGGCGGCTTCCCGGATTGCtattggctg

Function

GO: NA

KEGG:

id description
K23569 EMC8_9; ER membrane protein complex subunit 8/9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011857 True 3075 mRNA 0.56 15 5981093 5986961

Neighbor

gene id symbol gene type direction distance location
AMCG00011859 NA coding downstream 34173 5940650 ~ 5946920 (-)
AMCG00011856 NA coding downstream 41900 5936640 ~ 5939193 (-)
AMCG00011858 NA coding downstream 88013 5889044 ~ 5893080 (-)
AMCG00011841 NA coding downstream 134561 5844281 ~ 5846532 (-)
AMCG00011848 NA coding downstream 147738 5826036 ~ 5833355 (-)
AMCG00011866 NA coding upstream 34752 6021713 ~ 6028050 (-)
AMCG00011871 slc7a8,LOC104932911,LOC103358414,LOC102238406,LOC107753926 coding upstream 67123 6054084 ~ 6057440 (-)
AMCG00011870 LOC106608857,LOC105020553,LOC105894166,LOC101077604,LOC107588204,LOC106577803,LOC104932911 coding upstream 70532 6057493 ~ 6063479 (-)
AMCG00011869 prmt5,LOC107668985,LOC102797577 coding upstream 81187 6068148 ~ 6077058 (-)
AMCG00011885 NA coding upstream 126613 6113574 ~ 6123209 (-)
G133156 NA non-coding downstream 7713 5925629 ~ 5973380 (-)
G133147 NA non-coding downstream 84090 5896739 ~ 5897003 (-)
G133080 NA non-coding downstream 123928 5856663 ~ 5857165 (-)
G133076 NA non-coding downstream 126937 5853937 ~ 5854156 (-)
G132977 NA non-coding downstream 349567 5631094 ~ 5631526 (-)
G133180 NA non-coding upstream 2153 5989114 ~ 5990502 (-)
G133181 NA non-coding upstream 5353 5992314 ~ 6035898 (-)
G133186 NA non-coding upstream 11647 5998608 ~ 5999229 (-)
G133209 NA non-coding upstream 92885 6079846 ~ 6080079 (-)
G133277 NA non-coding upstream 284226 6271187 ~ 6347713 (-)
AMCG00011860 NA other downstream 23168 5954630 ~ 5957925 (-)
AMCG00011842 NA other downstream 109093 5860396 ~ 5872000 (-)
G133075 NA other downstream 128503 5851880 ~ 5852590 (-)
G133032 smyhc1,LOC100136150,LOC103364123,LOC103375112,LOC101484004,LOC102294892,LOC102297239,LOC103482310,LOC106963427,LOC103135328 other downstream 187248 5707283 ~ 5793845 (-)
G133183 NA other upstream 5453 5992414 ~ 5993018 (-)
AMCG00011868 NA other upstream 28949 6015910 ~ 6017080 (-)
AMCG00011867 NA other upstream 48958 6035919 ~ 6040630 (-)
G133208 NA other upstream 91409 6078370 ~ 6079367 (-)
AMCG00011886 NA other upstream 238559 6225520 ~ 6227193 (-)

Expression


Co-expression Network