AMCG00011858


Basic Information

Item Value
gene id AMCG00011858
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5889044 ~ 5893080 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011858
ATGGTGTGTGTCTGCATTGTACTGTGTCTGTACAATAGAGCACATCCGCCCCACCTTCCTGCACGCGCTCTGTCACCCCGACAAGTGGGCCTGGCCCTGGGCGTGGCTGTGGCGGCAGCGGTGCTGAGCGGGGGCTCCCTCTGGGCGGTGGCGGGGGCGTGTGCTGCTGGATACGTCAGAGAGAGGCTGCGCAGCGACATGGGTGACATCGAGGCTCACTTCCTGTCCCACCCCGACGACTGCTTCTGGGTCGCAGAGGCTGAGGTCGCCAGGGGGTCGAAGGTCATCGTGGGGACGGTGGCTGTTACCAGGTGGAGTGGTGAGGTGGCAGAGGAAGAAGTCAGGGGTCacggagagaaggagggagtgCAGGAGAGATGTAGGgagggggagagtgagagagagaggccggagcaggaggaggggagggtggCAGAGCTGTTCCGGATGCTGGTGCTGCCAGGCTGGCGGCGGGGGGGGCTGGGGAGGTGGCTGGCACAGACCGCCTTGGCCTTCTGCTCAGAGAGGGGCTACAGCCGCGTCATCCTGGAGACCAGCACCACTCAAGATGGCTGCGCTGGCGCTATACCGCGCCCTGGGTTTCCAGGACACACTCACCAGGGCACTGCCCCTCACCATGCACCCCGCTCGCATCTCTGTGCTGCGCCTGGAGAAACCAATGTGATGCCCACACTGGCCCCCAGGGACACCAGAGACAGCACTGAGAGCACCGCTcactacagcacaacacaaaatatAGCACAACGCAGCTCAGACTATTGTTTGCAATACTGCTATTCTACTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011858 True 807 mRNA 0.63 2 5889044 5893080

Neighbor

gene id symbol gene type direction distance location
AMCG00011841 NA coding downstream 42512 5844281 ~ 5846532 (-)
AMCG00011848 NA coding downstream 55689 5826036 ~ 5833355 (-)
AMCG00011847 tm9sf1 coding downstream 70381 5811975 ~ 5818663 (-)
AMCG00011840 NA coding downstream 78394 5802295 ~ 5810650 (-)
AMCG00011846 LOC103375112,LOC106569202,LOC107589805,LOC108428347 coding downstream 91819 5779489 ~ 5797225 (-)
AMCG00011856 NA coding upstream 43560 5936640 ~ 5939193 (-)
AMCG00011859 NA coding upstream 47570 5940650 ~ 5946920 (-)
AMCG00011857 NA coding upstream 88013 5981093 ~ 5986961 (-)
AMCG00011866 NA coding upstream 128633 6021713 ~ 6028050 (-)
AMCG00011871 slc7a8,LOC104932911,LOC103358414,LOC102238406,LOC107753926 coding upstream 161004 6054084 ~ 6057440 (-)
G133080 NA non-coding downstream 31879 5856663 ~ 5857165 (-)
G133076 NA non-coding downstream 34888 5853937 ~ 5854156 (-)
G132977 NA non-coding downstream 257518 5631094 ~ 5631526 (-)
G132862 NA non-coding downstream 725233 5162185 ~ 5163811 (-)
G132833 NA non-coding downstream 819377 5040983 ~ 5069667 (-)
G133147 NA non-coding upstream 3659 5896739 ~ 5897003 (-)
G133156 NA non-coding upstream 32549 5925629 ~ 5973380 (-)
G133180 NA non-coding upstream 96034 5989114 ~ 5990502 (-)
G133181 NA non-coding upstream 99234 5992314 ~ 6035898 (-)
G133186 NA non-coding upstream 105528 5998608 ~ 5999229 (-)
AMCG00011842 NA other downstream 17044 5860396 ~ 5872000 (-)
G133075 NA other downstream 36454 5851880 ~ 5852590 (-)
G133032 smyhc1,LOC100136150,LOC103364123,LOC103375112,LOC101484004,LOC102294892,LOC102297239,LOC103482310,LOC106963427,LOC103135328 other downstream 95199 5707283 ~ 5793845 (-)
AMCG00011845 LOC107680223,LOC107589804,LOC107688458,LOC107722552,LOC107088600,LOC103479335,LOC102208621,LOC105941235,LOC103147024,LOC108229072,LOC106514905,LOC107384191,LOC106590239 other downstream 128495 5741213 ~ 5760549 (-)
AMCG00011831 smyhc2,LOC107560354,LOC108436074,LOC108436073,LOC102297239,LOC102201055,LOC101483728,LOC103396567 other downstream 168063 5707393 ~ 5720981 (-)
AMCG00011860 NA other upstream 61550 5954630 ~ 5957925 (-)
G133183 NA other upstream 99334 5992414 ~ 5993018 (-)
AMCG00011868 NA other upstream 122830 6015910 ~ 6017080 (-)
AMCG00011867 NA other upstream 142839 6035919 ~ 6040630 (-)
G133208 NA other upstream 185290 6078370 ~ 6079367 (-)

Expression


Co-expression Network