AMCG00011866


Basic Information

Item Value
gene id AMCG00011866
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6021713 ~ 6028050 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011866
TTAATTGGTGCCGATCCAGCCGGTCGGTAAAGCCGGGAGAGATACCGCGCCGGCCCGGCATTTCAGCACTAACAACAGGGCGACACACTGGACACCGGCCTGGTTCGGTTCTCTGAAAATCAAACCCCTTTAACTTTTTTCATCTCTTCGTCGTCCATGTCcgctattaatattattactgtgAATTATACAATAGAGCCGTGAGCAGTATTAACTGTCCTGTGACTGCGGTGTTGTTCGAGATAAAGGGTGATGGCGCGGAGGTTGGCCAGGGCTGGGGGCGCTCTGCTGTGGCTGGTCTTGTTCACTCGAGTCCGGGGCTCCGGGGCCTCCGCCGCCGCATTTGTCGCTTGTCACGACGCATACATTGAGGTCCGCTTCCCGCAGAGCGCCCGCACCTCCACTGTCAAAATCCTGGCTAGTAACTGCATTgagAAGGGCAGATTCCTCTTCACTCTACAGGTGTCCGACCAAGCCGGCGTCCTCTCCAACATCACCGTCTCCTGTCGCCATGACAACCAGCTCTCGAAAACCTATCGGAGTTTCCGAATGTTCGGGAGCCTTGGGGTGAGGAAACTCcccagagagagggaagaagaagaagaagaagaagaagaggtggaggaggaggagagagagacagagaagtgGTCGTACTTTGTCTCCAGACCAACAAAACACACCACTGTCAGTGATGTCTGGACTTCAGGGATGGAGGGAGTTGGAGAGAGCAGGGAGGAGAAGATGGAGCGtgggatggaggaggaggaggaggaggaggaggaggaggaggaggatgacgaCGACGACAATGATAAGGAAGATGCTCCAGGAGAGAATGAGATGGTGGGagtggagagagaaaaggaggagaGTGGAGGAGAGGGGGGAATGGCTGAGAAGGTGAGGggtagagagagtgagagagagggggaggagaggcaaagggagagagatgcatctggacACATCTGGAGCCACTACTACAGCAGCACCCCTCCAGCAGCTGCACAGCACCTGCCTGCCCCCACAGCTGCACACATCTGGAGCTTGCAGTCTTCCCCGGTAACATCTGGATCCCACACCACCAGCAACACCAATGCAGCAGctgggagagaggaagaggaagaggaggaggaggaggaggaggaggacagagagggagcaGCTGCTGTGTACCCAAGATACCAACTGTCAACAGttggtttgcacatctggagcCACCTGAACACCACCGCTGCTCCCAGACCGGCCCCCACAGCTGGACACCtgtggaggaggggaggaggcaGCAGATGGAGGGGCTGGGGAATGATGGGGAGTGACCTCTGGGTTACCAGGAGGTCGGGGGTCAGGAAGGCAGGCCGCCTCCCCTCTCTGCCCTGCGGACCCCCCAGCATCTCCCGCGGCGCCTGCCTTCTGATTGGCTGCAGCTACCAGCCCGAGACCCACCCCCAGCATTCCTGTCAGTACAGTCAGACAGGTTGTTCTCGCAGTGCCGACGTCATTATCCTGGTTAACCGAACCTCCGTGACTCCGCCCCTCCGGCTGACGGCTGTGCATCTGTCCTGGGGTCAGGGGTCGCCAGAATGTCAGCCCAAGGTCATGACTTCTGACTTGGCCGTGTTCCACTTCCCAGTCCAGTCGTGTGGGAGCGAGAGCGAGGTGCGCTCCGAGGGGGTGTGGTACAGCAGTGAGGTGCAGGCGGAGAGAGAGGTCCTGAGGCAGCCCAAGGGAGCCATCTCCAGAGACGCCCCCTACAGgCTGCTAGTCCGCTGTTTCTATGGTGCCGGTGGTGATGTCTCAGTGGAAACGGTCATCGAGACGCTGCCCAGCATCGCTCCCCTGGTCAAGAACGGAACAATCAGATTCGAGCTGCAGATCGCCACCGatAGTTCTTTCACTTCCTGGTTTGCACCGGCCGACTTCCCCCTGACACGCACACTGGGAGACCCCGTGTTCGTGGAGGTCAGAGTTCACGGCCCCAGTGACCCTGCTGTGGGGCTGATGCTGGAGCAGTGCTGGGTGACCTCCGACCCCCTGCTGACCTCAGGGTCAAAATGGCCTCTGATAGAGAACAGGTGTCCGTACCCAGGGGATAACTATCTGACCATGACCGAACCGGGGGAGAGTGGTCTGGGTGTGCTCCCCTCTGGCCGGCGCCGCTTCTGGTTCCGGATGCTCGCGTTCATGGGGGCACTGACGGACCTGCCGCTGCACTCGCAGgtgtatgtgcagtgcagtgtgtctctgtgctccaGTGTAGAGGACAGCTGCTGGACCCAGTGTCCACAGAGGAGAAAGAGACGGGGTCTCACGCCCTCCCAGGTCCTGGTGTCCTCAAGTGGCTCAGTCTTCTTCCTGCCACCCCCCCGTAGCCTTGCTGACAGTGCCCTCCAAGTGTCGCTGAGTGCTGTGTGCTGGCTGTCCTCCGGGGCTGCAGGGGGCGGTGTGCTGCTGGCGGTGctgtctctgctgtgtgtgctgAGGGCCAGAATGCACCAGCAGTGTCCTGACCACTGACCTCAATAAACACACTGAACTGCACCGCTCTGTGCCTTATTACTGACCCCACGAGTGGCTCTATTACTAATATACTCATTCCTATCCTTACTTGTATTGGTAGCAGCAGTAGATGACTTCATATTATTGCCAGTATCTTTTATATTGATGGCTGTTGGCAGCCGCAGTGACAGTCGGGCAGCGCGGGAGCTGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011866 True 2717 mRNA 0.58 11 6021713 6028050

Neighbor

gene id symbol gene type direction distance location
AMCG00011857 NA coding downstream 34752 5981093 ~ 5986961 (-)
AMCG00011859 NA coding downstream 74793 5940650 ~ 5946920 (-)
AMCG00011856 NA coding downstream 82520 5936640 ~ 5939193 (-)
AMCG00011858 NA coding downstream 128633 5889044 ~ 5893080 (-)
AMCG00011841 NA coding downstream 175181 5844281 ~ 5846532 (-)
AMCG00011871 slc7a8,LOC104932911,LOC103358414,LOC102238406,LOC107753926 coding upstream 26034 6054084 ~ 6057440 (-)
AMCG00011870 LOC106608857,LOC105020553,LOC105894166,LOC101077604,LOC107588204,LOC106577803,LOC104932911 coding upstream 29443 6057493 ~ 6063479 (-)
AMCG00011869 prmt5,LOC107668985,LOC102797577 coding upstream 40098 6068148 ~ 6077058 (-)
AMCG00011885 NA coding upstream 85524 6113574 ~ 6123209 (-)
AMCG00011887 NA coding upstream 98547 6126597 ~ 6137761 (-)
G133186 NA non-coding downstream 22484 5998608 ~ 5999229 (-)
G133180 NA non-coding downstream 31211 5989114 ~ 5990502 (-)
G133156 NA non-coding downstream 48333 5925629 ~ 5973380 (-)
G133147 NA non-coding downstream 124710 5896739 ~ 5897003 (-)
G133080 NA non-coding downstream 164548 5856663 ~ 5857165 (-)
G133209 NA non-coding upstream 51796 6079846 ~ 6080079 (-)
G133277 NA non-coding upstream 243137 6271187 ~ 6347713 (-)
G133286 NA non-coding upstream 328415 6356465 ~ 6360880 (-)
G133417 NA non-coding upstream 610197 6638247 ~ 6638592 (-)
G133480 NA non-coding upstream 661958 6690008 ~ 6692129 (-)
AMCG00011868 NA other downstream 4633 6015910 ~ 6017080 (-)
G133183 NA other downstream 28695 5992414 ~ 5993018 (-)
AMCG00011860 NA other downstream 63788 5954630 ~ 5957925 (-)
AMCG00011842 NA other downstream 149713 5860396 ~ 5872000 (-)
G133075 NA other downstream 169123 5851880 ~ 5852590 (-)
AMCG00011867 NA other upstream 7869 6035919 ~ 6040630 (-)
G133208 NA other upstream 50320 6078370 ~ 6079367 (-)
AMCG00011886 NA other upstream 197470 6225520 ~ 6227193 (-)
AMCG00011882 NA other upstream 203108 6231158 ~ 6233113 (-)
AMCG00011884 NA other upstream 223896 6251946 ~ 6254840 (-)

Expression


Co-expression Network