AMCG00011868


Basic Information

Item Value
gene id AMCG00011868
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6015910 ~ 6017080 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011868
atgaGAGAGGAATACCACACTGTCCCAGGGATAGATGGAGGGAGGCACATTGCATTGTTCCAGGGAAAGGGAGTGAGCGTGCACTGTTACTCTGGATGTCACTGGTGTGAACATGAGACGGtGTGTCTCCGAATCCAGATCAACCCTCAGAACAAGAGTGACTTCCTGTCCGTCTCCCCCGAGCGCGCCTTCGCCGACTTCCTGTTCGCCCACACCGTGCTGCACCTGGTGGTCATCAACTTCATCGGCTGA
>TU167022
CTCTGTGTCagtattaatctctctctctcgctcagtGTGTCTCCGAATCCAGATCAACCCTCAGAACAAGAGTGACTTCCTGTCCGTCTCCCCCGAGCGCGCCTTCGCCGACTTCCTGTTCGCCCACACCGTGCTGCACCTGGTGGTCATCAACTTCATCGGCTGAGGCCCCGCCCTCGGGCCCCAGAGACCAAGACAGGATCTCACTACGGAGCCCAACCAACCAAAAACCCACCCACAGCCAACCAACCACACTGTACCacagacggacggacagacggagagagagatgccCCTCGCAGTAAATGCACACTAGGATCCAGTAAGCGGGAGAGACGGTGCCCCCCAAACTCTCTACAGGCACAGCAGGGGAACTACAGCTCCCTAGAGGAATAATGTCAGCCTCTGAGCTCCGTCTGTCGGTCTGTCCTGCAGTGACATCAGCTGACTGATTCACATCTTCTGCTGAttcactttttgtattttcaaccTTTTTTGACCTTTGTTTCCAAAGTTTTGATGAGATAATGGAATAAAACCAGTAATGTAACATTGTGTGGCAGTTTTTCTGCTTGTGTATGAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008250 oligosaccharyltransferase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011868 False 252 mRNA 0.56 2 6016786 6017080
TU167022 True 583 lncRNA 0.52 2 6015910 6016951

Neighbor

gene id symbol gene type direction distance location
AMCG00011857 NA coding downstream 28949 5981093 ~ 5986961 (-)
AMCG00011859 NA coding downstream 68990 5940650 ~ 5946920 (-)
AMCG00011856 NA coding downstream 76717 5936640 ~ 5939193 (-)
AMCG00011858 NA coding downstream 122830 5889044 ~ 5893080 (-)
AMCG00011841 NA coding downstream 169378 5844281 ~ 5846532 (-)
AMCG00011866 NA coding upstream 4633 6021713 ~ 6028050 (-)
AMCG00011871 slc7a8,LOC104932911,LOC103358414,LOC102238406,LOC107753926 coding upstream 37004 6054084 ~ 6057440 (-)
AMCG00011870 LOC106608857,LOC105020553,LOC105894166,LOC101077604,LOC107588204,LOC106577803,LOC104932911 coding upstream 40413 6057493 ~ 6063479 (-)
AMCG00011869 prmt5,LOC107668985,LOC102797577 coding upstream 51068 6068148 ~ 6077058 (-)
AMCG00011885 NA coding upstream 96494 6113574 ~ 6123209 (-)
G133186 NA non-coding downstream 16681 5998608 ~ 5999229 (-)
G133180 NA non-coding downstream 25408 5989114 ~ 5990502 (-)
G133156 NA non-coding downstream 42530 5925629 ~ 5973380 (-)
G133147 NA non-coding downstream 118907 5896739 ~ 5897003 (-)
G133080 NA non-coding downstream 158745 5856663 ~ 5857165 (-)
G133209 NA non-coding upstream 62766 6079846 ~ 6080079 (-)
G133277 NA non-coding upstream 254107 6271187 ~ 6347713 (-)
G133286 NA non-coding upstream 339385 6356465 ~ 6360880 (-)
G133417 NA non-coding upstream 621167 6638247 ~ 6638592 (-)
G133480 NA non-coding upstream 672928 6690008 ~ 6692129 (-)
G133183 NA other downstream 22892 5992414 ~ 5993018 (-)
AMCG00011860 NA other downstream 57985 5954630 ~ 5957925 (-)
AMCG00011842 NA other downstream 143910 5860396 ~ 5872000 (-)
G133075 NA other downstream 163320 5851880 ~ 5852590 (-)
AMCG00011845 LOC107680223,LOC107589804,LOC107688458,LOC107722552,LOC107088600,LOC103479335,LOC102208621,LOC105941235,LOC103147024,LOC108229072,LOC106514905,LOC107384191,LOC106590239 other downstream 255361 5741213 ~ 5760549 (-)
AMCG00011867 NA other upstream 18839 6035919 ~ 6040630 (-)
G133208 NA other upstream 61290 6078370 ~ 6079367 (-)
AMCG00011886 NA other upstream 208440 6225520 ~ 6227193 (-)
AMCG00011882 NA other upstream 214078 6231158 ~ 6233113 (-)
AMCG00011884 NA other upstream 234866 6251946 ~ 6254840 (-)

Expression


Co-expression Network