AMCG00011869 (prmt5,LOC107668985,LOC102797577)


Basic Information

Item Value
gene id AMCG00011869
gene name prmt5,LOC107668985,LOC102797577
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6068148 ~ 6077058 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011869
cagaggagagaaacaaaaaactcctatggatggcacgtaggagaaaatgaatctctgggggtccactgACAGACGAGGCCTAAtggctgcctcccctccaggcagttattacagcagcaaggagatcaggaagctcttgatcggtgctgctggctgtgctcttccctctggtgggagCCTCTCGCCAACCCAATGGAGTGGGGGGGTTGGATCATGAACAGCCGCTGGGTGGtaatggctcgtcagacctttgGTATGTGGGTGCCTCGTTAGCCTTCTGCCTGTATGAGTCACAATGGAGTCATTTGGAAAAGatcaatatagttgctgatcaatactagaaattctTACACGTTCTTTTACACACGGTTGTGTCGGCACcctgaggaagaggagaaatGGTTACGTCACATAGAGCCCCCCCCGCAGCGCTGCACAGTCAACGCAGACGCCCTGGTCCTGCTGTCCACACAGCGGGGCTGCAGCTCAGCCTGAGTGTCCTGGACTGGGCCCTCGCTGCCAACCTGGACGAGATCGGAGAAAGTCAAGAACCAGGCGCACACATTCCAGGTCACCCTCCGCAGCCTGCTTCCAGAGCCAAGATGGCGCCAGTTTCCCCATTCATGCGCCCGGTCTTCAGTCGCGCCGCCCCTTTCCTGTCTCTCTCGGTGTCTGAGTCCAACATGGCGTCCGGCAGCTCAGCGAGCCGCGTTTCCAGCGGCCGGGATCTGAACTCGGTACCGGAGGTGGCGGAGACGCTGGGGGCGGTGGCCCGGCTCGGgtttgatTTCCTCTGTATGCCCGTGTTCCATCCGCGCTTCCAGAGGGAGTTCGGACTGGACCCAGCCCAGTCCCGCCCCGGAGCCCAGACCCGCTCTGACCTGCTGCTGTCGGGGAGAGACTGGAATACCCTGATTGTCGGGAAGCTCTCGCCGTGGATACAGGCGGACTCGGAGGTGGACACGGTGCGGAAAAACTCGGAGGAGgctCTGGCGCAGGAGTTGAACTTCTCTGCGTATCTCGGCCTGCCAGCCTTCATGCTGCCGCTGCAGAGCCAACGCTGTGCCAACCTCGCccgcctgctgctgctgcacttGCACACCGGGCACCACTCCTGCATGTTCTGGGTGCGCGTGCCGCTGCTGGCCCCCGAGGACGTGCGCGACGACGTGATCGAGAACGAGCCGGTGCATCGGCGCGACGAGCAGGACGAACGCACCTGGAGCTGgtgGCACTCCTTCAGAACCCTCTGCGACTACAACAAGAGGATCTGCctggCCATCGAGATCGGACCCGACTTGCCCTCCGACGCCGTGGTTGACAAGTGGCTGGGGGAACCCATCAAAGCGGCCATCCTGCCCACTAGCATCTTCCTGACCAATAAGAAGGGCTTCCCCGTCCTGTCAAAGGCCCACCAGCGAATCATTTTCCGGCTTTTCAAGctggagGCCCAGTTTATCTTCACTGGCGCCAGTCGACACAGCGATAAGGATTTCCGGTCCTACCTGCAGTACCTGGACTACCTGAACCAGAACCGCCCCACCCCCAACGCCTACGAGGTCTTCGCCAAGGGGTACGAAGACTACCTGCAGTCCCCTCTACAGcCCCTGATGGACAACCTGGAATCTCAGACCTATGAGGTTTTTGAGAAGGATCCCATCAAGTACTCCCAGTACCAGCAGGCTGTGTATAAGTGTCTGCTGGACAGAGTCCCAGAGGAGGAGAAGAGCACCAACGTACAggtgctGATGGTGCTGGGGGCGGGCCGCGGACCCCTGGTCAACGCGTCTCTGCaCGTGTCCAGCAGCCGCTCTCAGTGCCTGCGGTTCTCGGTGCAGTGCAACTCGGTGCTGCACGGCTTCGCTGGGTACTTCGAGACCACGCTGTACGCGGACATCACACTCAgtaTTCGTCCAGAGACTCACTCACCTGGGATGTTCTCCTGGTTCCCAATCCTCTTCCCACTAAAACAGCCCATCCCCCTGTCCCGCGGTGAGGAGGTGTGCCTGTGGTTCTGGCGCTGTAACTCGGGCCGGAAGGTGTGGTACGAGTGGGCCGTGACCGAGCCCGTGTGCTCAGCCATCCACAACCCGGCCGGCCGCTCCTACACCATCGGCCTGTAG

Function

symbol description
prmt5 Enables histone methyltransferase activity and protein-arginine omega-N symmetric methyltransferase activity. Involved in histone H4-R3 methylation and peptidyl-arginine methylation, to symmetrical-dimethyl arginine. Acts upstream of or within regulation of skeletal muscle fiber development. Predicted to be located in cytoplasm. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including heart; liver; pleuroperitoneal region; segmental plate; and shield. Orthologous to human PRMT5 (protein arginine methyltransferase 5).

NR:

description
PREDICTED: protein arginine N-methyltransferase 5

GO:

id name namespace
GO:0048742 regulation of skeletal muscle fiber development biological_process
GO:0006479 protein methylation biological_process
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity molecular_function

KEGG:

id description
K02516 PRMT5, HSL7; type II protein arginine methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011869 True 2123 mRNA 0.60 15 6068148 6077058

Neighbor

gene id symbol gene type direction distance location
AMCG00011870 LOC106608857,LOC105020553,LOC105894166,LOC101077604,LOC107588204,LOC106577803,LOC104932911 coding downstream 4669 6057493 ~ 6063479 (-)
AMCG00011871 slc7a8,LOC104932911,LOC103358414,LOC102238406,LOC107753926 coding downstream 10708 6054084 ~ 6057440 (-)
AMCG00011866 NA coding downstream 40098 6021713 ~ 6028050 (-)
AMCG00011857 NA coding downstream 81187 5981093 ~ 5986961 (-)
AMCG00011859 NA coding downstream 121228 5940650 ~ 5946920 (-)
AMCG00011885 NA coding upstream 36516 6113574 ~ 6123209 (-)
AMCG00011887 NA coding upstream 49539 6126597 ~ 6137761 (-)
AMCG00011881 NA coding upstream 63093 6140151 ~ 6144490 (-)
AMCG00011879 NA coding upstream 79055 6156113 ~ 6156798 (-)
AMCG00011888 NA coding upstream 93712 6170770 ~ 6192613 (-)
G133181 NA non-coding downstream 32250 5992314 ~ 6035898 (-)
G133186 NA non-coding downstream 68919 5998608 ~ 5999229 (-)
G133180 NA non-coding downstream 77646 5989114 ~ 5990502 (-)
G133156 NA non-coding downstream 94768 5925629 ~ 5973380 (-)
G133147 NA non-coding downstream 171145 5896739 ~ 5897003 (-)
G133209 NA non-coding upstream 2788 6079846 ~ 6080079 (-)
G133277 NA non-coding upstream 194129 6271187 ~ 6347713 (-)
G133286 NA non-coding upstream 279407 6356465 ~ 6360880 (-)
G133417 NA non-coding upstream 561189 6638247 ~ 6638592 (-)
G133480 NA non-coding upstream 612950 6690008 ~ 6692129 (-)
AMCG00011867 NA other downstream 27518 6035919 ~ 6040630 (-)
AMCG00011868 NA other downstream 51068 6015910 ~ 6017080 (-)
G133183 NA other downstream 75130 5992414 ~ 5993018 (-)
AMCG00011860 NA other downstream 110223 5954630 ~ 5957925 (-)
AMCG00011842 NA other downstream 196148 5860396 ~ 5872000 (-)
G133208 NA other upstream 1312 6078370 ~ 6079367 (-)
AMCG00011886 NA other upstream 148462 6225520 ~ 6227193 (-)
AMCG00011882 NA other upstream 154100 6231158 ~ 6233113 (-)
AMCG00011884 NA other upstream 174888 6251946 ~ 6254840 (-)
G133291 LOC105021468,LOC105907034,LOC107562413,LOC107588156,LOC106577802 other upstream 284333 6361391 ~ 6363728 (-)

Expression


Co-expression Network