AMCG00011870 (LOC106608857,LOC105020553,LOC105894166,LOC101077604,LOC107588204,LOC106577803,LOC104932911)


Basic Information

Item Value
gene id AMCG00011870
gene name LOC106608857,LOC105020553,LOC105894166,LOC101077604,LOC107588204,LOC106577803,LOC104932911
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6057493 ~ 6063479 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011870
ATGACGGACGGTCCTCGCCAGCGGGCCggagcggcggcggcggccggggATGCTGCGTCCGAGCCCGGGCAGGAGTCCCAGGGAGGCGGCGGCGGCGTGGCTCTGAAGAAGGAGATCGGCCTGGTCAGCGCCTGCGGGATCATCGTGGgagAGTACTACTGGCTGCAGCCAGCGCAGGCGTTCGAGTCGTTCGTGGAGCCGGACGTGGGGCTGATTGCTCTGGCCTTCCTGCAGGGCTCCTTCGCATACGGGGGCTGGAACTTCCTCAACTACGTCACGGAGGAACTGGTCGACCCCTACAGgAACCTCCCTCGGGCGATTTTCATCTCCATCCCGCTGGTGACCTTCGTGTACGTGTTTGCCAACGTGGCCTATGTCACGGCCATGAGCCCCCAGGAGCTACTGGCCTCCAACGCAGTCGCCGTGacattTGGTGAGAAGCTGCTGGGTGTGATGTCATGGATCATGCCCATCTCCGTGGCACTTTCCACCTTCGGAGGGGTCAACGGCTCCCTCTTCACCTCCTCCAGCGCTGCACCCCCATCCCCGCGCTGCTGTTCACGGTGA

Function

NR:

description
PREDICTED: large neutral amino acids transporter small subunit 2-like

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011870 True 567 mRNA 0.65 5 6057493 6063479

Neighbor

gene id symbol gene type direction distance location
AMCG00011871 slc7a8,LOC104932911,LOC103358414,LOC102238406,LOC107753926 coding downstream 53 6054084 ~ 6057440 (-)
AMCG00011866 NA coding downstream 29443 6021713 ~ 6028050 (-)
AMCG00011857 NA coding downstream 70532 5981093 ~ 5986961 (-)
AMCG00011859 NA coding downstream 110573 5940650 ~ 5946920 (-)
AMCG00011856 NA coding downstream 118300 5936640 ~ 5939193 (-)
AMCG00011869 prmt5,LOC107668985,LOC102797577 coding upstream 4669 6068148 ~ 6077058 (-)
AMCG00011885 NA coding upstream 50095 6113574 ~ 6123209 (-)
AMCG00011887 NA coding upstream 63118 6126597 ~ 6137761 (-)
AMCG00011881 NA coding upstream 76672 6140151 ~ 6144490 (-)
AMCG00011879 NA coding upstream 92634 6156113 ~ 6156798 (-)
G133181 NA non-coding downstream 21595 5992314 ~ 6035898 (-)
G133186 NA non-coding downstream 58264 5998608 ~ 5999229 (-)
G133180 NA non-coding downstream 66991 5989114 ~ 5990502 (-)
G133156 NA non-coding downstream 84113 5925629 ~ 5973380 (-)
G133147 NA non-coding downstream 160490 5896739 ~ 5897003 (-)
G133209 NA non-coding upstream 16367 6079846 ~ 6080079 (-)
G133277 NA non-coding upstream 207708 6271187 ~ 6347713 (-)
G133286 NA non-coding upstream 292986 6356465 ~ 6360880 (-)
G133417 NA non-coding upstream 574768 6638247 ~ 6638592 (-)
G133480 NA non-coding upstream 626529 6690008 ~ 6692129 (-)
AMCG00011867 NA other downstream 16863 6035919 ~ 6040630 (-)
AMCG00011868 NA other downstream 40413 6015910 ~ 6017080 (-)
G133183 NA other downstream 64475 5992414 ~ 5993018 (-)
AMCG00011860 NA other downstream 99568 5954630 ~ 5957925 (-)
AMCG00011842 NA other downstream 185493 5860396 ~ 5872000 (-)
G133208 NA other upstream 14891 6078370 ~ 6079367 (-)
AMCG00011886 NA other upstream 162041 6225520 ~ 6227193 (-)
AMCG00011882 NA other upstream 167679 6231158 ~ 6233113 (-)
AMCG00011884 NA other upstream 188467 6251946 ~ 6254840 (-)
G133291 LOC105021468,LOC105907034,LOC107562413,LOC107588156,LOC106577802 other upstream 297912 6361391 ~ 6363728 (-)

Expression


Co-expression Network