AMCG00011881


Basic Information

Item Value
gene id AMCG00011881
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6140151 ~ 6144490 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011881
ctctctctctctctctctctctctctctctctctctccagtggaCAGCGGTGATCTCCAGTCATTGTCCAGGTCTCTGGATGCTCACAGCCTACTGTCCCAGAGAGAGAATAACCCCACCCCCACTGCAGCACAGCCCCTCCGTCCCCCGAGTCTCTGTCTGAGAGGAGCAGGAGAGAGCAGCCTGGTGGACCCATCTGAAGCCCCCAGGAGCAGCGAGGAGACGCAGAGAGCAGAGCAGACGAGCACCAGCCAGCTAACACTGACCATGAATAACTCAAAAACCACAGAACAGGACACATACGTTGACAATGAATACTACACTAGAATTACAATGATCACTGTTTTTGCAATTGacatttttgttgtggttgttgggCTTCCCGCCATCTGCCTGGCCATCTGCCGCCTGTACCGCATGATCAGGGCTGACATGTTGGTGCCCATCTACATCATCAATCTGCTCATTGCCAACCTCCTGCGGATCAGTGTGAGAGTATCCTGGTTTATCGTTCCAATACTTCCAGATGTTGAGAGATTAGATATTGTTGTGCCTATTTTGGACAGTCTCTTTATCTTCGGCCACACTGCTAGCATTGGGTTCATGATGTGCATTGCCCTGGAGAGATACCTGGTGTATCACCGCAGTGTCAGGCACACTGCACTGGTCTCTGTGGCAGTGTGGGTGTCAGTTGTGATACTCACTGCAGTGATGATTGTactatattttattctttaccTTCACATGCAAATAACTATAGCTTTCTCTGTGATCTGCCTCCTGCCATTCCCTCttctcttgttcttcttcttcggCACATGGAAAGCCATCGCCGGCGCCACCTCTGTAAGAGACGCAGAGAAGAGGAGGATTGTGCGCATGCTGGCCCTCATCCTGGGCACCTACACTGTGCTCTTCCTCCCATTCTGCATAGTGAATTTCATTAAGAGctatacaataaatacaaatattaacattGCCTTTATCATTACAATTGAAATGGTGAATCTCAGTGTCCTTGTAAACCCAGTGCTGTACATCCTCCTCAGGCCTGATGTCAGGAACACACTGGGCTCTCGCCCCTGCTGTCAGAGGCTGTTCACACTgaccaactgctggacacccaGAGCTGAGCAGGAGACAGAGGATACAGACACTGTGTCTCCTACTGAAACTAGCGTC

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011881 True 1182 mRNA 0.50 3 6140151 6144490

Neighbor

gene id symbol gene type direction distance location
AMCG00011887 NA coding downstream 2390 6126597 ~ 6137761 (-)
AMCG00011885 NA coding downstream 16942 6113574 ~ 6123209 (-)
AMCG00011869 prmt5,LOC107668985,LOC102797577 coding downstream 63093 6068148 ~ 6077058 (-)
AMCG00011870 LOC106608857,LOC105020553,LOC105894166,LOC101077604,LOC107588204,LOC106577803,LOC104932911 coding downstream 76672 6057493 ~ 6063479 (-)
AMCG00011871 slc7a8,LOC104932911,LOC103358414,LOC102238406,LOC107753926 coding downstream 82711 6054084 ~ 6057440 (-)
AMCG00011879 NA coding upstream 11623 6156113 ~ 6156798 (-)
AMCG00011888 NA coding upstream 26280 6170770 ~ 6192613 (-)
AMCG00011883 NA coding upstream 49787 6194277 ~ 6207902 (-)
AMCG00011877 LOC106569426,LOC108438927,LOC102797877,LOC107668975 coding upstream 72684 6217174 ~ 6222794 (-)
AMCG00011880 NA coding upstream 92254 6236744 ~ 6238926 (-)
G133209 NA non-coding downstream 60072 6079846 ~ 6080079 (-)
G133181 NA non-coding downstream 104253 5992314 ~ 6035898 (-)
G133186 NA non-coding downstream 140922 5998608 ~ 5999229 (-)
G133180 NA non-coding downstream 149649 5989114 ~ 5990502 (-)
G133156 NA non-coding downstream 166771 5925629 ~ 5973380 (-)
G133277 NA non-coding upstream 126697 6271187 ~ 6347713 (-)
G133286 NA non-coding upstream 211975 6356465 ~ 6360880 (-)
G133417 NA non-coding upstream 493757 6638247 ~ 6638592 (-)
G133480 NA non-coding upstream 545518 6690008 ~ 6692129 (-)
G133529 NA non-coding upstream 683492 6827982 ~ 6828221 (-)
G133208 NA other downstream 60784 6078370 ~ 6079367 (-)
AMCG00011867 NA other downstream 99521 6035919 ~ 6040630 (-)
AMCG00011868 NA other downstream 123071 6015910 ~ 6017080 (-)
G133183 NA other downstream 147133 5992414 ~ 5993018 (-)
AMCG00011860 NA other downstream 182226 5954630 ~ 5957925 (-)
AMCG00011886 NA other upstream 81030 6225520 ~ 6227193 (-)
AMCG00011882 NA other upstream 86668 6231158 ~ 6233113 (-)
AMCG00011884 NA other upstream 107456 6251946 ~ 6254840 (-)
G133291 LOC105021468,LOC105907034,LOC107562413,LOC107588156,LOC106577802 other upstream 216901 6361391 ~ 6363728 (-)
AMCG00011895 NA other upstream 228010 6372500 ~ 6378472 (-)

Expression


Co-expression Network