AMCG00011882


Basic Information

Item Value
gene id AMCG00011882
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6231158 ~ 6233113 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011882
CACCAGCTGAGGCGGGAGGAGGCTGTGTCTGAAGACAGCGATTGGACGCTGGATGTCGCTGGTCCCTCCCCACCACCAATCAGCGTCAGCCCTGCCTTGGAAGACACCATCACTCCCCCGGCATCTGAGGCCAaagtgggggagagagagcaggaaaaGGAGAAGCAAGAGGGGGCGGCAGGAGAAGACTGTCAGCCCACCCTGGACCGGAACACAGATGGGCCGGTCCGGATCGCCCTGCTGGGGCAGAACGGGGACCTGTCTCTGTTGCGTGTGGACGTGTGTGTTCTCGTGTTCTCGATCGCCGAAGCTTCCACCGCACGGCCCAGCTCCGCCTGCAGCTCCGCGAaggCCCAGTCCAGTGCCGCGCTCTTTGACTGTCAGTACGTGGAGCTCTCTGCCTCGCTGGACCACCGCGTCACCGAGCTCCTGCAGGGGGCCGTGCGCTGCGCCCGGGGCTGGACTCCACGGCGACCTGGGGCCGGGGGCGGGGCAGGGGGCACGGCCGGTGGCGGGGTGGAGGGGGGTACGGGGCCCGGGCTGGGGGGCCGGAGGAAGAGCCTGACCAGCAGGGCCAGGCGCTTCCTGTCCAGCCTGCTGCCGCGGCACCACAGCGCCTCCTCTGGCCGCTTCTGCCGACAGAAGTCTCGCTCCTGCCACGACCTGAGCTCTGTTTGA
>TU167115
CCCGGGCTGGGGGGCCGGAGGAAGAGCCTGACCAGCAGGGCCAGGCGCTTCCTGTCCAGCCTGCTGCCGCGGCACCACAGCGCCTCCTCTGGCCGCTTCTGCCGACAGAAGTCTCGCTCCTGCCACGACCTGAGCTCTGTTTGAgaaaggggaggagagagggagagggggaagagagggaggaagggagagggacGAGAGATCCACACAGAGTCTCACACAGACCCAGAGACCCTTCTGACACTTTGAGGTCCACACAGACAATCTACCCTAATTTATGGCACTCCTACTGTATATATCCCTGAGTGTGTGTCGTCTGACTTTGAGAATCAGATGGTTTTGTATTTGATGCACTTTACTGGACGCCTGCAGGACGGGACGCTGCTGTCCATCTGAGACTCGCCAGTGCTCCTCCAttcttctccatctctccctctctgtctctcgctctcatttgtgttttttttatgtaaataaggagagagagagatgacaaggagggagagaggggagtgagggagagaggggagagagagagggagagaggggagagaaaaagagagacagagaggggagagagagggcgagaggAGGTATCGGCCAGTGGTGGACACAGCATCCTGGCCACAGTGCGGTCCAGTCCTCCAGTGCTGCGCTCTGTCACTCACCTGTCAGCTCATTAAACTGCTT

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse
ko05032 Morphine addiction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011882 False 678 mRNA 0.68 4 6231704 6233113
TU167115 True 690 lncRNA 0.56 1 6231158 6231847

Neighbor

gene id symbol gene type direction distance location
AMCG00011877 LOC106569426,LOC108438927,LOC102797877,LOC107668975 coding downstream 8364 6217174 ~ 6222794 (-)
AMCG00011883 NA coding downstream 23256 6194277 ~ 6207902 (-)
AMCG00011888 NA coding downstream 38545 6170770 ~ 6192613 (-)
AMCG00011879 NA coding downstream 74360 6156113 ~ 6156798 (-)
AMCG00011881 NA coding downstream 86668 6140151 ~ 6144490 (-)
AMCG00011880 NA coding upstream 3631 6236744 ~ 6238926 (-)
AMCG00011878 NA coding upstream 38089 6271202 ~ 6272996 (-)
AMCG00011894 NA coding upstream 83673 6316786 ~ 6322728 (-)
AMCG00011900 NA coding upstream 154411 6387524 ~ 6393414 (-)
AMCG00011904 NA coding upstream 197644 6430757 ~ 6435298 (-)
G133209 NA non-coding downstream 151079 6079846 ~ 6080079 (-)
G133181 NA non-coding downstream 195260 5992314 ~ 6035898 (-)
G133186 NA non-coding downstream 231929 5998608 ~ 5999229 (-)
G133180 NA non-coding downstream 240656 5989114 ~ 5990502 (-)
G133156 NA non-coding downstream 257778 5925629 ~ 5973380 (-)
G133277 NA non-coding upstream 38074 6271187 ~ 6347713 (-)
G133286 NA non-coding upstream 123352 6356465 ~ 6360880 (-)
G133417 NA non-coding upstream 405134 6638247 ~ 6638592 (-)
G133480 NA non-coding upstream 456895 6690008 ~ 6692129 (-)
G133529 NA non-coding upstream 594869 6827982 ~ 6828221 (-)
AMCG00011886 NA other downstream 3965 6225520 ~ 6227193 (-)
G133208 NA other downstream 151791 6078370 ~ 6079367 (-)
AMCG00011867 NA other downstream 190528 6035919 ~ 6040630 (-)
AMCG00011868 NA other downstream 214078 6015910 ~ 6017080 (-)
G133183 NA other downstream 238140 5992414 ~ 5993018 (-)
AMCG00011884 NA other upstream 18833 6251946 ~ 6254840 (-)
G133291 LOC105021468,LOC105907034,LOC107562413,LOC107588156,LOC106577802 other upstream 128278 6361391 ~ 6363728 (-)
AMCG00011895 NA other upstream 139387 6372500 ~ 6378472 (-)
G133365 NA other upstream 144985 6378098 ~ 6461788 (-)
AMCG00011903 NA other upstream 161899 6395012 ~ 6403156 (-)

Expression


Co-expression Network