AMCG00011884


Basic Information

Item Value
gene id AMCG00011884
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6251946 ~ 6254840 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011884
ATGGATCAGGGGTCGAAGCAGGACTCTGTGGCTGAGGTCTGTCAGGACTACGACAGGGTCTCTCAGCGAGCCGAGCAGGAGCTCAGCCCCGACACGGCCACGCAGTACTATATCCTGCTGATCCTGACCGATGGGACAGTCAGTGATCTTGCGTCCACCCGGGAGGCCATCGTGCGAGCCAGCAGCCTGCCCGTCTCTGTGGTGATCGTGGGCGTCGGCTTCGCGGACTTCGGGGAGATGCGGGCGCTGGACGGCGACGAGGGCGGGCCGCTGCTGGCCGGGGGGGGGCGGCGCGCACAGAGAGACATCGTCCAGTTTGTGCCCTTCAGGGACTTCAAGAACgccccAGTGTCcactctctctcagtgtgtgctGGCTGAGATTCCCGATCAGCTGGTGCAGTACTTCCTCAGCCGGGGGATCACCCCAGGCCTGCCCCGCCCCTCTCCGAGCCCCGCTCCCAGTCCTACAGAACCCTGA
>TU167121
CATTCCccattccccctctctctgtctctctctcactccctctcttctctttctctctgtctccccccttctctctctcccttgctccCTCACTCCCCCCCTCCCTGCCCTATcgttttcctttctctctctcgctctctctctcaggtggcAATTGACTTCACTGCGTCGAATGGCGACCCCCGGAGTAACTCCTCCCTCCACTACATCGACCAATCACAGCCCAACGAGTATGTCAAGGCCCTGTCAGCTGTGGCTGAGGTCTGTCAGGACTACGACAGGTGTCACATGACTTCCCACTCAACTTCAACCCAGACAACCCAGAGTGCGAAGGTATCGAGGGGGTGATAGAGGCATACAGACAGTGCCTGCCCAGGGTGCAGCTGTACGGCCCCACCAACGTGGCGCCCATCATCAACAGGGTCTCTCAGCGAGCCGAGCAGGAGCTCAGCCCCGACACGGCCACGCAGTACTATATCCTGCTGATCCTGACCGATGGGACAGTCAGTGATCTTGCGTCCACCCGGGAGGCCATCGTGCGAGCCAGCAGCCTGCCCGTCTCTGTGGTGATCGTGGGCGTCGGCTTCGCGGACTTCGGGGAGATGCGGGCGCTGGACGGCGACGAGGGCGGGCCGCTGCTGGCCGGGGGGGGGCGGCGCGCACAGAGAGACATCGTCCAGTTTGTGCCCTTCAGGGACTTCAAGAACgccccAGTGTCcactctctctcagtgtgtgctGGCTGAGATTCCCGATCAGCTGGTGCAGTACTTCCTCAGCCGGGGGATCACCCCAGGCCTGCCCCGCCCCTCTCCGAGCCCCGCTCCCAGTCCTACAGAACCCTGATCTGGCCCAGGACCGGGCTCCAGTCCAGAACCACAGCTGGACAGACCTACATCCCAGGACCCAGCTGAACCCTGATCCAGTCTACATGCAAACACAGCAGAACCACATCTGTACTAAACCACAGCCCGACCTGAACTCCGACCCAGCAGAACACCGCTGAACCAGAACCAGTCCAGATCTCACGGACGCACAGTCACAGTGAGCTGTGGTTCCCCTGCTGAGCCTGTGGGGGTGTTATGGCCTTCTCTCtcacaacattattattattattattattattattattattattattattattattattattattattattactccaGTGAGCTGCAGTTCCCCTGCTGAGCCTGTAGAGAGTGAGGGGGAGCTGTCTCCCTATCACTCTCATCAGATTAActtgaataaacaaatatatatatgcatttttggTACAGGAGATATGCACACAAATACACCTATATtcataaatatctatatatgaaGTATGTATGTATCCACTTATCTaaatgtctgtctatctgttcTCTATAGATCAATAGAAAGAGGGAGCGATAGAGAGAGATGTTCACAGATGTAGGGGGCTCTTTATATATCTTTTGGACATGTCTGCCTGCTTTGTGTCTTTTTACTTTTCTGAAATGTTCACTGTTCCTCACTTACGGCTACACTGCCTCTTCCATCATCTTGGTTTGCAATCGCTTTGCTTCGCTCCCTGTTTCTCCGCTGTAGAACCGCGCACTTGATAAAATATCGTAGCTCGTCTGCCCCTCCTGCCCCCCGACAGCATTGTTTCCATACACATATGTAATCAGTCATCGTGAACGGCCTCCGACTGCAGAGCTCTGTGATAAAGAACTGAATAAACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011884 False 480 mRNA 0.65 5 6252815 6254840
TU167121 True 1714 TUCP 0.53 5 6251946 6254695

Neighbor

gene id symbol gene type direction distance location
AMCG00011880 NA coding downstream 13020 6236744 ~ 6238926 (-)
AMCG00011877 LOC106569426,LOC108438927,LOC102797877,LOC107668975 coding downstream 29152 6217174 ~ 6222794 (-)
AMCG00011883 NA coding downstream 44044 6194277 ~ 6207902 (-)
AMCG00011888 NA coding downstream 59333 6170770 ~ 6192613 (-)
AMCG00011879 NA coding downstream 95148 6156113 ~ 6156798 (-)
AMCG00011878 NA coding upstream 16362 6271202 ~ 6272996 (-)
AMCG00011894 NA coding upstream 61946 6316786 ~ 6322728 (-)
AMCG00011900 NA coding upstream 132684 6387524 ~ 6393414 (-)
AMCG00011904 NA coding upstream 175917 6430757 ~ 6435298 (-)
AMCG00011901 NA coding upstream 182860 6437700 ~ 6446839 (-)
G133209 NA non-coding downstream 171867 6079846 ~ 6080079 (-)
G133181 NA non-coding downstream 216048 5992314 ~ 6035898 (-)
G133186 NA non-coding downstream 252717 5998608 ~ 5999229 (-)
G133180 NA non-coding downstream 261444 5989114 ~ 5990502 (-)
G133156 NA non-coding downstream 278566 5925629 ~ 5973380 (-)
G133277 NA non-coding upstream 16347 6271187 ~ 6347713 (-)
G133286 NA non-coding upstream 101625 6356465 ~ 6360880 (-)
G133417 NA non-coding upstream 383407 6638247 ~ 6638592 (-)
G133480 NA non-coding upstream 435168 6690008 ~ 6692129 (-)
G133529 NA non-coding upstream 573142 6827982 ~ 6828221 (-)
AMCG00011882 NA other downstream 18833 6231158 ~ 6233113 (-)
AMCG00011886 NA other downstream 24753 6225520 ~ 6227193 (-)
G133208 NA other downstream 172579 6078370 ~ 6079367 (-)
AMCG00011867 NA other downstream 211316 6035919 ~ 6040630 (-)
AMCG00011868 NA other downstream 234866 6015910 ~ 6017080 (-)
G133291 LOC105021468,LOC105907034,LOC107562413,LOC107588156,LOC106577802 other upstream 106551 6361391 ~ 6363728 (-)
AMCG00011895 NA other upstream 117660 6372500 ~ 6378472 (-)
G133365 NA other upstream 123258 6378098 ~ 6461788 (-)
AMCG00011903 NA other upstream 140172 6395012 ~ 6403156 (-)
AMCG00011913 acin1,LOC106608850,LOC103475989,LOC102237119,LOC106918835,LOC107377177,LOC107591382 other upstream 210430 6465270 ~ 6537760 (-)

Expression


Co-expression Network