AMCG00011897 (ajuba,LOC107753931,LOC107588152,LOC107668830)


Basic Information

Item Value
gene id AMCG00011897
gene name ajuba,LOC107753931,LOC107588152,LOC107668830
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6473151 ~ 6478205 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011897
ATGGGGTCAGAGTTCACGGGCCGGGCAGCCATGGAGCGGCTGGGCTGCCGGCTGCTGGAGAAGCTGCGTCTGTCGGACTCCAGCGGTGCCAGGCTGGGCGGCTCACGGCGGAAGAGCGAGGGCAGCGGCACCAGCAGCAGGAGGGCGCGGGGCGGGGTGGGCTCGGGCCCCTCCCTGGCTGCCACCACACTGAGCGGCAACCACTCCCCGCCGCCCAGCCTGGCAACGCCCACCCCCGTCCTGGTGCCGCCCAGCGACCGGGGCAGCAGGGGGGGAGCGGACAGCTACCGGGACAGCGGCTCCTACTGCAGCCTAGCCGGGCCGGACTGTTGCCGGGTGGGGGACGGCGGCTCCCACAACAGCTGGGCCGGGCTGGACGGGCCCTGCGGCGGCTACAGCGGCGCCTACAGAGGGGGCAGCGGCAGCTCCCACAACAGCACGGGGCCCGAGGGCTACGGCAGCACCTACAGAGGGGGGGACGGCGGTTCccacaacagcagcagccccaGCGGGGGGGGAGGTGGCGGGTGTTACGGCGGCCGGGGGGGGGCAGGTCAGCGGCGCTACTCCCTGGAGAtgcagcagctcctcctgcGACACCAGCATCTCCTGcagccgcccccccacccccacgccGGCGCCAACGCCCAGCCGACGCACCAACATGCCAACGCACTGCCGACGCACCCCCACCGGCACAGCGCAGCCGAGCCGGGGCAGCCCCCTCCCCGGGAGAGGCCCAAGCGCTACTCCCTGCAGGAGCCGCCGCACCCCCTGCCGCCCCCACACCCCCGGGCCCAGCGCCACAGCGACGGCCTGGCGGCGTGCTCCCCCCTGGCCAGCCCCCGGTCCTCCTGCTGCAGCGCGGGGGGGGGCAGCCCGGACAGCGGCTGCAGCAGCAACCGGACCAGCGGCATCAGCCTGGGGTACGATCTGCGGCTCGGACCGCCCCCCGCCCCGCCCGGACCCCCCAGCGCCCCTGACCCAGCCGTCGTCTACGCCCTGCTGGGAGGGCTGTGGGAAgggggcagggcagggggaGGGCAGGACGTCAGACACTCCTACCCACCCGCCCTGCTGGCCGAGGGGGCCGGCGGGGGGCCGTGGGGGCAGGAGagtgggggaggagagagagaaggaagaggaggagaggaggacgGAAGAGgtggaggggaggagggagggctGGGCGGCGCCACTCAGGACAACAGACACTCCTATCCGCCCAGCCTGGGCCCCGGCTCTCTGTTGGGGGGCCCCAGGGGTGGCCCCGGGGTGTGGTACCAGGAGGTGCTGTGTGCTCTGCTAGGGAGGGATGCCATAATCAGCAACAGCAGCGGTAACGCGAGCCGCCACACGGCCACCGACTCGCCAAGCTTCGCTGGCGCCGCCCCCGCGCATCACCACGCAGACAGAGACCCCGCTGCCCCCCGGCCCGAGGAGCCCCCGGCCCCCCGCAGAGACCCCAGCCTCGCTGAGAGACAGGAGTACTATGGTGCGTGTGTGAAGTGCAGTAAGGGAGTGTACGGAGCCGACAATGCGTGTCAGGCGCTGGACAGCCTGTATCACACACACTGCTTCACATGTGTGTCCTGCGGTCGCACTCTCAGAAACAGGGATTTCTTCCACGCCAACGGCTCAGTGTACTGCAAAGAGGATTACATGTTCTCAGGGTTCCAGGATGCTGCGGagaagtgcagtgtgtgtggacaCCTGATTCTGGAGAAGATTGTCCAGGCTCTGGGCAACTCCTACCACCCCAGCTGTTTCCGCTGCGTGGTGTGCAGCCGGCCGCTGGACGGAGTGTACTTCACTGTGGACTACCGCAACAAAGTCTACTGCGTCCCCGACTACCACAGGACCTTCGCTCCCAAGTGCGCAGCCTGCCTGCAGCCCATCCTGCCCGCggagGGCAGCGACGAGATTCTCAGGGTTGTGTCCATGAACAGAGACTATCACTTTGAGTGCTACCACTGTGAgGACTGTGGTCTGCAGCTGTCAGACCAGCCGGGCTCTCAGTGTTTCCCGCTGGACTCCCACCTTCTCTGTCATTCCTGTCACATGACCAGGGTGTGTCCCGCCCTGCTGCGGACCCCACACAGCACACATTGAGAACCAGTCCCTCCTGGACGCAGAAACGGCAGGAGAGGAGactgctgaaaaaaacaactcgAAATTGCCCCGGAAACAAACTCGTGCAGCACCCAAACATTCCCCCCGGGGCAACAACTGAGATGACAAAGGTTCCTGCTGTTACACACTTAAAATACTGCCTGCACATCACAGCACAGGGTAGCGCAGCACTGAATACATTCCCCACAGAAATCGCCAAGAAAGGCGGCGCGGCACAAGAATCATTACCGTCTTCATGGTTCCGCATTCAACGCAGTACATCTTTGTAGAGCGTTTGCCTCCAGCCGTGAGGGGCGTCAGAGCAGCGCACCCACGCTATTTAAAACGACACCCTTCACGAGATCAGGGCTCGGTTTCTCATCGCTGGAGGGGTTGTTTTGCACTTAAATGACTGCTGCTCCGCTGCAAGTTcgtgttttttgcatttgtttttcctgccaAGACTGACATTCCTGCTGTCTATGactgtgtaataaatatttaagttgC

Function

symbol description
ajuba Predicted to enable transcription corepressor activity. Acts upstream of or within heart development. Predicted to be part of transcription regulator complex. Predicted to be active in P-body; adherens junction; and nucleus. Is expressed in head. Orthologous to human AJUBA (ajuba LIM protein).

NR:

description
PREDICTED: LIM domain-containing protein ajuba

GO: NA

KEGG:

id description
K16682 AJUBA, LIMD1, WTIP; LIM domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011897 True 2622 mRNA 0.66 8 6473151 6478205

Neighbor

gene id symbol gene type direction distance location
AMCG00011898 NA coding upstream 12442 6449205 ~ 6460709 (+)
AMCG00011899 NA coding upstream 48001 6421133 ~ 6425150 (+)
AMCG00011896 NA coding upstream 64621 6406462 ~ 6408530 (+)
AMCG00011905 NA coding upstream 68673 6402981 ~ 6404478 (+)
AMCG00011889 NA coding upstream 99971 6371242 ~ 6373180 (+)
AMCG00011906 NA coding downstream 24604 6502809 ~ 6503675 (+)
AMCG00011908 LOC106600235 coding downstream 48654 6526859 ~ 6531036 (+)
AMCG00011910 NA coding downstream 83894 6562099 ~ 6563815 (+)
AMCG00011907 NA coding downstream 88962 6567167 ~ 6568025 (+)
AMCG00011922 NA coding downstream 161517 6639722 ~ 6640333 (+)
G133264 NA non-coding upstream 125445 6322766 ~ 6347706 (+)
G133248 NA non-coding upstream 248632 6224306 ~ 6224519 (+)
G133145 NA non-coding upstream 395766 6067574 ~ 6077385 (+)
G133129 NA non-coding upstream 437165 5992317 ~ 6035986 (+)
G133350 NA non-coding downstream 88654 6566859 ~ 6578010 (+)
G133354 NA non-coding downstream 111211 6589416 ~ 6589658 (+)
G133440 NA non-coding downstream 198311 6676516 ~ 6717923 (+)
G133465 NA non-coding downstream 256027 6734232 ~ 6734963 (+)
G133491 NA non-coding downstream 271454 6749659 ~ 6750920 (+)
AMCG00011876 NA other upstream 212762 6255950 ~ 6260389 (+)
AMCG00011873 NA other upstream 371140 6084852 ~ 6102011 (+)
AMCG00011853 zfhx2,LOC108245441 other upstream 565977 5893524 ~ 5907174 (+)
AMCG00011837 NA other upstream 584267 5886917 ~ 5888884 (+)
G133059 NA other upstream 643619 5828801 ~ 5829532 (+)
G133327 NA other downstream 5742 6483947 ~ 6489208 (+)
AMCG00011909 ccnb1ip1 other downstream 67183 6545388 ~ 6560662 (+)
AMCG00011917 NA other downstream 166671 6644876 ~ 6653731 (+)
AMCG00011948 NA other downstream 657663 7135868 ~ 7140132 (+)
G133619 NA other downstream 758736 7236941 ~ 7242300 (+)

Expression


Co-expression Network