AMCG00011898


Basic Information

Item Value
gene id AMCG00011898
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6449205 ~ 6460709 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011898
ATGGCGCGGCGCCACGCGGAGGTGACCCGGCTGCTGTGGCTCGCGGCGGCGCTGGCGGCGGTGGACGGGGCGGCGGGCAGCGATGCGGTCAAGCCGGAGgcTTGGCTGCAGCAGTATGGGTACCTGCCCCCCGGTGACCTGCGCACTCACATGGTGCGTTCCCCCCACTCCGTGTCCTCGGCCATTGCCGCCATGCAGCGCTTCTACAACCTGACAGTGACTGGTGAGGTGGATGACAACACCATAAAGGCGATGAAGCGGCCTCGCTGTGGCGTCCCAGACAAGTTCGGCTCAGAGCTGAAGAGCAACCTGAGGAGGAAACGCTTTGCTATCCAAGGGCTGAAGTGGGACAAGACTGAAATCACATTCAGTATAGTGAACTACACTCCCAAAGTGGGAGAGTACGAGACGCACGAGGCGATCCGCCAGGCGTTCGCGGTGTGGCAGGGCGTCACTCCGCTGCGCTTCCGCGAGGTGCCCTACCACTACATCCGTGACAAGACTGAGAAATACGCCGACATCATGCTGCTCTTCGCCGAAGGATTCCATGAAGACAGCAGCCCCTTCGACGGCGAGGGCGGCTTCCTGGCGCACGCGTACTTCCCCGGCCCGGGCATAGGGGGCGACACACACTTCGACCTGGCCGAGCCCTGGACCGTCCGCAGAGACGACCTGTATGGTAATGACGTGTTCCTGGTGGCGGTGCACGAGCTGGGCCACGCCCTGGGGCTGGAGCACTCGTCCGACCCCTCCGCCATCATGGCCCCCTTCTACCAGTGGATGGACAAGGAGAACTTTGTCCTGCCCGAGGACGATCGTCGGGGCATACAGCAGCTCTACGGATCAAAGGGCCATGTTCCTCCCAGAGTTCCAGTGACCCCTCGTCCTCCCAAGGTCACGCCCCGCCCCCCCAAGACCCCGGGGACTCCTGGGAAGCCGCACGGTCCTCCCTACGGCCCCGACATCTGCGAGGGACACTACGACACCATCGCCATACTGAGGGGGGAGATGTTTGTCTTCAAGgacAAGTGGTTCTGGCGGGTGCGGGATGGCCGGGTGATGGATGGCTACCCACTCCCCATCGGTCACTTCTGGCGCGGCCTGCCCGCCTCCATCAACGCAGCCTATGAGCGCCACGATGGCAACTTCGTCTTCTTCAAGGGTGACAGGCACTGGGTGTTCAGTGAGGCCAGCCTGCAGCCCGGATACCCCAAGAGCCTGCGGGAGATGGGAAAGGGGCTTCCCAAAGACCGGCTCGACGCCGCCCTCTACTGGATGCCCAACGGGAAGACATACTTCTTCAGAGGGAACaaCGAATACCCCAAGCCCATCAGTGTGTGGGAGGGCGTCCCAGAATCGCCACGCGCCGCCTTCATGAGCAAGGATGGAGcCTTCACCTATTTCTACAAGGCGAATCGCTACTGGAAGTTCAACAACCAGCAGCTGAAGGTGGAGCCCGGCTACCCCAAGTCTGTGCTGAGGGACTGGATGGGCTGCGCTGGGGAGGGCGAGCCCGAGGACCCCCGGCGCGGAGGGGGAGGAGGTGAAGGAGGCGGAGGAGACACCGATGTCATCATCATCGAGGTGGACGAGGCCGGGGGCGGGCCGGGGGTGGCGGCCGTGGTCATCCCAGTGCTGCTGTTCCTGTGCGTGATCCTGGCCCTGGGGGCCGTGCTGTTCTTCCGCCGCTATGGCACCCCCCGCCGCCTGCTGTACTGCCAGAGGTCACTGCTGGACAAGGTCTAatagacagaaagagagaaaaaaggagagagactatcaggtctatatatatatatgttatgtcTATCCACACACTATCAgatactcactcacacacacacgcacgcacgcggCACAGGCAGGCACcagcgagagggagggagagagagaagcactcGGAAAAGTAAACGACCCTCTGGTaccctctctccccttcctcctcctccctctctccctctctctctctctctctctctctctctctccccgtcgaTCTCCCTCC

Function

GO: NA

KEGG:

id description
K07763 MMP14; matrix metalloproteinase-14 (membrane-inserted)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011898 True 2005 mRNA 0.62 11 6449205 6460709

Neighbor

gene id symbol gene type direction distance location
AMCG00011899 NA coding upstream 24055 6421133 ~ 6425150 (+)
AMCG00011896 NA coding upstream 40675 6406462 ~ 6408530 (+)
AMCG00011905 NA coding upstream 44727 6402981 ~ 6404478 (+)
AMCG00011889 NA coding upstream 76025 6371242 ~ 6373180 (+)
AMCG00011893 NA coding upstream 80894 6364173 ~ 6368311 (+)
AMCG00011897 ajuba,LOC107753931,LOC107588152,LOC107668830 coding downstream 12442 6473151 ~ 6478205 (+)
AMCG00011906 NA coding downstream 42100 6502809 ~ 6503675 (+)
AMCG00011908 LOC106600235 coding downstream 66150 6526859 ~ 6531036 (+)
AMCG00011910 NA coding downstream 101390 6562099 ~ 6563815 (+)
AMCG00011907 NA coding downstream 106458 6567167 ~ 6568025 (+)
G133264 NA non-coding upstream 101499 6322766 ~ 6347706 (+)
G133248 NA non-coding upstream 224686 6224306 ~ 6224519 (+)
G133145 NA non-coding upstream 371820 6067574 ~ 6077385 (+)
G133129 NA non-coding upstream 413219 5992317 ~ 6035986 (+)
G133350 NA non-coding downstream 106150 6566859 ~ 6578010 (+)
G133354 NA non-coding downstream 128707 6589416 ~ 6589658 (+)
G133440 NA non-coding downstream 215807 6676516 ~ 6717923 (+)
G133465 NA non-coding downstream 273523 6734232 ~ 6734963 (+)
G133491 NA non-coding downstream 288950 6749659 ~ 6750920 (+)
AMCG00011876 NA other upstream 188816 6255950 ~ 6260389 (+)
AMCG00011873 NA other upstream 347194 6084852 ~ 6102011 (+)
AMCG00011853 zfhx2,LOC108245441 other upstream 542031 5893524 ~ 5907174 (+)
AMCG00011837 NA other upstream 560321 5886917 ~ 5888884 (+)
G133059 NA other upstream 619673 5828801 ~ 5829532 (+)
G133327 NA other downstream 23238 6483947 ~ 6489208 (+)
AMCG00011909 ccnb1ip1 other downstream 84679 6545388 ~ 6560662 (+)
AMCG00011917 NA other downstream 184167 6644876 ~ 6653731 (+)
AMCG00011948 NA other downstream 675159 7135868 ~ 7140132 (+)
G133619 NA other downstream 776232 7236941 ~ 7242300 (+)

Expression


Co-expression Network