AMCG00011903


Basic Information

Item Value
gene id AMCG00011903
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6395012 ~ 6403156 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011903
ATGCCCACCGTCCCCTACCAATGCCCCCTGTCCCCTACAAACTCTGGcctgtgctgtgtttttcagAGCATCTTCAGTAACATGGGGAAGCGCTTCTGGGAGATGGAACCGTCCATGTGGGACACGCTGAACAATGCGGGGCTGAGGGGGCACTATCTCTGCAGTGTGTACGCGGCGCGGCTCATGGTCCCGGCGGGGCGGGGCTTGATGGTGGTGGAGAAGATGGACGCAGAGCTGGACAGTCAGAAGCTGCAAGAGattAGAGATGTATTCTGTACAGGAGAGACACCAGAGTTCAGTGGCAAGTGTATCGTGGAGCTTGcgaaagATAAGAGCCTGATATCTCTGACAGGAAAGGTTCTGATGACCTGTGACCTGTCAAGGCGATATAATATACGAGACGTGGATggttgcAGCATTGTTGACTACACCTCCTTCAGTTATCTCCTGTCCAAGGTGCCCTACCTCTCCTGGCTCTCTTACATCACCCCGTCGTTCCTGCGCATCCCCAAGTGGGTCCTGACGCTTTCGGCCAGCAATGAATCAGCAAATCGCACTCTCTTCCTGGTCTCGGGGCTGTGGCAGCGTCTGATTGGCTCCCTGGGGGAGTGGATAGGAACCGAGCGCGCCCGACGCcgtggagagaggggggaaggcGGGGCCAGCAGGTCACGACTGCGGCTCCTGTCCGACAGGCCGGTGGCGCAGACGCGCAGCTCGTCGGTGTTTTACGGTACGCGGAAGTGTGTGCGCCGCCGCTCAGTGTCCCGGCGGGCTGGGCTGGGGGCGATGGCGCTGTCTGGCTGGGTGTGTGTTGTGACTGGAGCGTCCCGGGGCATCGGGAAGGGAGTGGCCTTGCAGCTGTCTGAGGCCAGAGCCATTGTGTACATCACCGGCCGGCACGAGCAGAGCCTTAGAGAGACCGCCACCGAGGTGGAGGCGAGGGGCGGGACCTGCGTGCCCGTGGTCTGTGATTCGACAAAGGAGGATGACATCAAGCAACTGTTTGAGCGAATCACACGTGAGCAGAGCGGGCGGCTGGACATCCTGGTGAACAACGCGTATGCTGGAGTGCAGGTCTCCATCTGA
>TU167254
TGCGCCGCCGCTCAGTGTCCCGGCGGGCTGGGCTGGGGGTCCGGTCTGCAGTGTCTCTCCGCCGCTGTGTGTCAGTTCTCAGAGATTCCAGGCGATGGCGCTGTCTGGCTGGGTGTGTGTTGTGACTGGAGCGTCCCGGGGCATCGGGAAGGGAGTGGCCTTGCAGCTGTCTGAGGCCAGAGCCATTGTGTACATCACCGGCCGGCACGAGCAGAGCCTTAGAGAGACCGCCACCGAGGTGGAGGCGAGGGGCGGGACCTGCGTGCCCGTGGTCTGTGATTCGACAAAGGAGGATGACATCAAGCAACTGTTTGAGCGAATCACACGTGAGCAGAGCGGGCGGCTGGACATCCTGGTGAACAACGCGTATGCTGGAGTGCAGGTCTCCAT
>TU167255
TGCGCCGCCGCTCAGTGTCCCGGCGGGCTGGGCTGGGGGTCCGGTCTGCAGTGTCTCTCCGCCGCTGTGTGTCAGGTACAGTGCCACTTACTGAGGCTTACTGGCGCTCATCACTGCATACGATACTGCTACTTCCTATAATTAggTTCTCAGAGATTCCAGGCGATGGCGCTGTCTGGCTGGGTGTGTGTTGTGACTGGAGCGTCCCGGGGCATCGGGAAGGGAGTGGCCTTGCAGCTGTCTGAGGCCAGAGCCATTGTGTACATCACCGGCCGGCACGAGCAGAGCCTTAGAGAGACCGCCACCGAGGTGGAGGCGAGGGGCGGGACCTGCGTGCCCGTGGTCTGTGATTCGACAAAGGAGGATGACATCAAGCAACTGTTTGAGCGAATCACACGTGAGCAGAGCGGGCGGCTGGACATCCTGGTGAACAACGCGTATGCTGGAGTGCAGGTCTCCAT

Function

GO: NA

KEGG:

id description
K11163 DHRS1; dehydrogenase/reductase SDR family member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011903 True 1089 mRNA 0.60 10 6395012 6403156
TU167254 False 390 TUCP 0.63 3 6395016 6397975
TU167255 False 461 TUCP 0.61 3 6395016 6397975

Neighbor

gene id symbol gene type direction distance location
AMCG00011900 NA coding downstream 1598 6387524 ~ 6393414 (-)
AMCG00011894 NA coding downstream 72284 6316786 ~ 6322728 (-)
AMCG00011878 NA coding downstream 122016 6271202 ~ 6272996 (-)
AMCG00011880 NA coding downstream 156086 6236744 ~ 6238926 (-)
AMCG00011877 LOC106569426,LOC108438927,LOC102797877,LOC107668975 coding downstream 172218 6217174 ~ 6222794 (-)
AMCG00011904 NA coding upstream 27601 6430757 ~ 6435298 (-)
AMCG00011901 NA coding upstream 34544 6437700 ~ 6446839 (-)
AMCG00011902 NA coding upstream 64933 6468089 ~ 6471733 (-)
AMCG00011915 efs,LOC107668851,LOC107753933,LOC107691941,LOC107562533 coding upstream 102823 6505979 ~ 6509786 (-)
AMCG00011912 slc7a7,LOC102780628 coding upstream 129636 6532792 ~ 6535027 (-)
G133286 NA non-coding downstream 34132 6356465 ~ 6360880 (-)
G133277 NA non-coding downstream 47299 6271187 ~ 6347713 (-)
G133209 NA non-coding downstream 314933 6079846 ~ 6080079 (-)
G133181 NA non-coding downstream 359114 5992314 ~ 6035898 (-)
G133417 NA non-coding upstream 235091 6638247 ~ 6638592 (-)
G133480 NA non-coding upstream 286852 6690008 ~ 6692129 (-)
G133529 NA non-coding upstream 424826 6827982 ~ 6828221 (-)
G133547 NA non-coding upstream 453065 6856221 ~ 6856699 (-)
G133571 NA non-coding upstream 567137 6970293 ~ 6970708 (-)
AMCG00011895 NA other downstream 16540 6372500 ~ 6378472 (-)
G133291 LOC105021468,LOC105907034,LOC107562413,LOC107588156,LOC106577802 other downstream 31284 6361391 ~ 6363728 (-)
AMCG00011884 NA other downstream 140172 6251946 ~ 6254840 (-)
AMCG00011882 NA other downstream 161899 6231158 ~ 6233113 (-)
AMCG00011886 NA other downstream 167819 6225520 ~ 6227193 (-)
AMCG00011913 acin1,LOC106608850,LOC103475989,LOC102237119,LOC106918835,LOC107377177,LOC107591382 other upstream 62114 6465270 ~ 6537760 (-)
G133393 NA other upstream 127541 6530697 ~ 6548895 (-)
AMCG00011916 LOC107706350,LOC107738137,LOC107706351,LOC107668963 other upstream 136805 6539961 ~ 6545755 (-)
AMCG00011920 NA other upstream 204173 6607329 ~ 6631802 (-)
AMCG00011924 emc4,tmm85 other upstream 259976 6663132 ~ 6740536 (-)

Expression


Co-expression Network