AMCG00011917


Basic Information

Item Value
gene id AMCG00011917
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6644876 ~ 6653731 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011917
ATGTCATTGGCTGTGGACGAGACAGCGGGGGACCTGCCAGTGAGAGACGTGGGACTGAAGTGTGGGCTGATCTCTGCAGtgcaggatcGCCAGCGCGTGTCTCGTGTGTCCAGGGAGCAGCTGGAGGATCAGTGCCTGAGGCTCCAGGAGGAGAAACAGCTACTGGGACAGCACTGCAGAGCACTGGAGCGCAGGACACACAGaTTGTCCACCAAGCTGCAGCGTCTGACTGCAAGCCGGGGGGGCAGCGGGGGCGGTGTGGGGGCGGCGGGGGGGCGGGAAGCGGAGCTGCAGCTGACCGTGCAGGAGCTGCGCAGTCGCGTGGCGTCCCTGGAGAACCAGCGGGAGGCGCTGAGGAGTAGACTGAGCTTGGCCACACAGCACTGCCTCAGCCTGGGGGTGCGCGGCCCTGGGGGGACATCCGGGCATGTCAGACAGCACCCCAAGAGTGCCCGAGAAGCACTGTGCGACAGCTTCTATCTTCGCCCCGCAgcactgcctgcctgcctcgtGCTCCTGTTAGAGCCCAGTCACTGCTGTGCATCTGGGGCGGGGGTACAGGACAGCCAGCGCTCTCGGAGGCAGCTGTCGGAGAAGAGCGCCGCCCTGCTGGCCCTGCAGGAGAAGTTCAAAGCCCTGCAGCAGagCGAAAGGTCCCTGAGAGAGAGTCACTCAGCCCTGCTGGAGCGAGTGGAGGAGCTGACAGAGGAGCTGAAGCAAGAGAGGCAGAGAGCGCTGGCTCTGGAGAGCGAGCTCAACACTGCCACCCTGTCGCAGTGTGGCCTGGAGGAGttgtTTCGGctccagagagagggagaggagcaaCTGGATTTTCTGGAGAGGCAGGCCCCAAGGCATGCTGGGACCCTGGGGGAGCATGGGCGGAGCCATTGGGAGGCAGAGGCGGGGCATGCGGAGGCCCTGCTGGAGCTGAACAAGACCAGAGAGCTGCTGAGCCTCCAGCACCGACTCAACACTCACTGCCAGGTACTGAACAGCCCCCAACACACACTGACTCCACAGACACAGTACACCGGGGAGGAAGAAGCCATGCAGTGGCTGCTGCGGGGGGGGCAGGACTCACTGTTGGAGCTGCACCTGGGGGGGGCCACCTTCACCCCGGCCAGCCTGCGCCTGATGATGTCCGAGGTGGGGGGTCAGGGGTCGGAGGTCGTGACCTTCTGCACCTACTCCTTCCTAGACTTCGAGACCCACGCCACTCCCCTGGTGAGGGGGGGGTGTCCGGTCTACGGCTACACCTCCCGCTACCCTGTTGCCCCCAGAGACCTGCGCCTGGGGGAGGATGAGGGCGCGGGGGTGCGGGTGGAGCTGCACCAGTCTCTGGGGGGGGTGAGGTTCTTGACCCGGGGGGCCGGCCTGATTCCGTTGAGGGAGGCGCAGCAGAGGGAGGGCGAGAGGGTGAGCGGAACAGCCAGCATCACAGGATCAGACAGGGAGATCCTGGGGGTCCTGGATTACTGGGTGCGGCTGTGGCCCCCCCTGGAGCCGACAGATGAGCCAACAGACGGACTGATGGATAGACACACTGGGCCAGGGTATCTGCCCTCCTATACCCTGGGCTGGGGCGATCCCACACACCAGggcctATTTGACTTCTCTGGTGGAGGGGTTGCGAATGAGTTGGAGGTGCTGCTGCAGAGCTGCTGCGACCTGAGCGCCTGCCCCGGGCGGCCGGGACTCCTTCCCTGCGCCTACGCCGCATACCGGCTGTACGACCTGCCCCCCCGAGCCACACCTGCCGCCCCGCCTTCTGCCAACCCCGCCCTGCGTGACCGCGCCCGCTACCCACTGGCAGTGACCCCTGACCTGCTGGCGTATCTGCGGGGGGCATGTCTGTGGGTGTACGTGTTCGATGCCTCCGCCTCCCAGTTGCCACCCCCTGCCTATCTGGGCAAGACCCCCCCACGTGGGACGGTTCGGCTTGCTCTGCACTGGCGCTTTCCCTTCCAGCCACAGGGGGCACCACCGAGCACAAGGCAGGAGCGCcgggagagggagacggagagagagagagcaggagctGGGCAGAGACCAGTTGCCAAGCCCCGGTCGGGCGAATCACGGGCCTCCACCgacagtgatgtcatcattgTCCCCCACCTATCAAGACCAGCTGAAAAGGTGAGAAgtcgggagagagagataggccagatagtgtccagtcagtgtctaTTAACACCTCACTTCTCTCTATCTCTGAAGGTGGACAAGTTGAGGGTGGAGATCCTGTCCCTCAGTTTTGACCCCACCTCCCGCATCGCTCTGGACCAATCAGTGCAGCGCATCTATGTGGAGTACCGCCTCTTGGGCATTCCCATGGAGACCACAGAGACCCCGATGTTAAAGTTCACGGTGGTCAGCGAGCCAATGGACgagcaggaggaggagtgtGTGGATGTCGGCCACGCCCACCTAGACCTCCAGGAAGTGCTGCTGACCGGA
>TU167247
GCTGGAGCGAGTGGAGGAGCTGACAGAGGAGCTGAAGCAAGAGAGGCAGAGAGCGCTGGCTCTGGAGAGCGAGCTCAACACTGCCACCCTGTCGCAGTGTGGCCTGGAGGAGatgCAGGAGCGAGTCACAGCCCTAGAAGGGGAGAGAGATCTTCTGAAGGAGAGCTATGACTCTCTGCTGGAGAGctCTCTGAGTGTGCAGTCGCAGCAGGGTGGTGGAGTTAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011917 True 2463 mRNA 0.64 14 6644876 6653731
TU167247 False 226 lncRNA 0.60 3 6648710 6649165

Neighbor

gene id symbol gene type direction distance location
AMCG00011922 NA coding upstream 4543 6639722 ~ 6640333 (+)
AMCG00011907 NA coding upstream 76851 6567167 ~ 6568025 (+)
AMCG00011910 NA coding upstream 81061 6562099 ~ 6563815 (+)
AMCG00011908 LOC106600235 coding upstream 113840 6526859 ~ 6531036 (+)
AMCG00011906 NA coding upstream 141201 6502809 ~ 6503675 (+)
AMCG00011932 NA coding downstream 48182 6701913 ~ 6706375 (+)
AMCG00011923 NA coding downstream 121974 6775705 ~ 6780766 (+)
AMCG00011938 NA coding downstream 167942 6821673 ~ 6823491 (+)
AMCG00011933 NA coding downstream 206143 6859874 ~ 6862669 (+)
AMCG00011939 NA coding downstream 224244 6877975 ~ 6890954 (+)
G133354 NA non-coding upstream 55218 6589416 ~ 6589658 (+)
G133350 NA non-coding upstream 66866 6566859 ~ 6578010 (+)
G133264 NA non-coding upstream 297170 6322766 ~ 6347706 (+)
G133248 NA non-coding upstream 420357 6224306 ~ 6224519 (+)
G133145 NA non-coding upstream 567491 6067574 ~ 6077385 (+)
G133440 NA non-coding downstream 22785 6676516 ~ 6717923 (+)
G133465 NA non-coding downstream 80501 6734232 ~ 6734963 (+)
G133491 NA non-coding downstream 95928 6749659 ~ 6750920 (+)
G133508 NA non-coding downstream 127053 6780784 ~ 6781572 (+)
G133534 NA non-coding downstream 202450 6856181 ~ 6856773 (+)
AMCG00011909 ccnb1ip1 other upstream 84214 6545388 ~ 6560662 (+)
G133327 NA other upstream 155668 6483947 ~ 6489208 (+)
AMCG00011876 NA other upstream 384487 6255950 ~ 6260389 (+)
AMCG00011873 NA other upstream 542865 6084852 ~ 6102011 (+)
AMCG00011853 zfhx2,LOC108245441 other upstream 737702 5893524 ~ 5907174 (+)
AMCG00011948 NA other downstream 482137 7135868 ~ 7140132 (+)
G133619 NA other downstream 583210 7236941 ~ 7242300 (+)
G133667 NA other downstream 851351 7505082 ~ 7508751 (+)
AMCG00011971 NA other downstream 905932 7559663 ~ 7575192 (+)
AMCG00011987 NA other downstream 1271405 7925136 ~ 7928238 (+)

Expression


Co-expression Network