AMCG00011948


Basic Information

Item Value
gene id AMCG00011948
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7135868 ~ 7140132 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011948
ATGAACCAGGCTAGGCTGTGGATCTGCTCTGTTAACTGGGATGAGTCCCACATGTCTGCCCGCACCGACCACGTGTTTGGGGACAGCGACCCCTGCTGGACGCGCCCGTTGTCTCGGCTTGGTAGTGCATCGGACATTGAGTCTGCAGGAAtgagcccctctctctctcagAGTGTCGTTGCTGTTAATGCAGCCAGTGATGCGGAGCTGTCAGATACAGAAGCTGACGATAGACAACAT
>TU167581
TCCTGACTGCGCCAGTCTGTTGAGCCTGGGAGAGGAACGGGCAGGCAGTGTAGCGGTTATACATGCACTCTCATTAAGCATTATGCCGTGCCTAGGATGTAAGATATGTATTAGATTGACGCTCTTGTTTATGGGTGGGTTTATTTTTAGGCGAGACCGTGCCGTGGTTAAACAGGGCTGGGGTTGAAGCGGGAGTGTGAGTCCTGAGGTTCCCACGCTGCTTTTAATGTGATCAAACTGGGAGCAAgtcttgttcattttgttttgaagtgattcagttataaatgtatatactggAGAAGTTTCATCAGCACTGCGTCTAGCGGGAGCTTGCGTAGTTTACACAATGCGGAAGAGCCTATTGTTCTCCACGTTGTAACGCCATGCGTCATAATAGCGAATTATGTCGGTTAATTATGATTAGAGGGGGTTTATAGATGGTGGGGATTTGTACAGTATTGCAGGGCTGGTGTAAGTAACACGGAGCCGGGAAGCCGCACGCAATGAACCAGGGACATTGAGTCTGCAGGAAtgagcccctctctctctcagGCCTCTCCTCCCGCTGCCTCGCTCTCCTGACCGGAGAGGGAACTCACTTCATTCTGCCTCTATGCATGTTGTAGTTCACGTGAAgtaattgtctgtatgtgtattttttaaatctgaccatcttcaataaaaatgattttgtgaaattctgtatttgtgtttgtgtgagattTGAGATCTGTGTGCATTTTT
>TU167582
TCCTGACTGCGCCAGTCTGTTGAGCCTGGGAGAGGAACGGGCAGGCAGTGTAGCGGTTATACATGCACTCTCATTAAGCATTATGCCGTGCCTAGGATGTAAGATATGTATTAGATTGACGCTCTTGTTTATGGGTGGGTTTATTTTTAGGCGAGACCGTGCCGTGGTTAAACAGGGCTGGGGTTGAAGCGGGAGTGTGAGTCCTGAGGTTCCCACGCTGCTTTTAATGTGATCAAACTGGGAGCAAgtcttgttcattttgttttgaagtgattcagttataaatgtatatactggAGAAGTTTCATCAGCACTGCGTCTAGCGGGAGCTTGCGTAGTTTACACAATGCGGAAGAGCCTATTGTTCTCCACGTTGTAACGCCATGCGTCATAATAGCGAATTATGTCGGTTAATTATGATTAGAGGGGGTTTATAGATGGTGGGGATTTGTACAGTATTGCAGGGCTGGTGTAAGTAACACGGAGCCGGGAAGCCGCACGCAATGAACCAGGTAAGATGTTAGTACTTTTCATGGTGAGGGGGCACTAAAAGGTACAGGGCATTGATCAAAGCGTGGTGGGGACCTCTAAAAGTGCAACCCTGCAGAGAAATGCACAGGCCTGGCCCGTTAGAATATCCTTTATAATAAGCGGCTGTCTCTGTTCCCGCTGTCTGTACAGTAACAGGTGGATAATTGTTCGCAGATGTGATTTATGGGGGCTGTCTGTAGCGCAGATGTTGTGGGAGAGGCTGTAATTTCTTGGGAATATCGCAGGCTAGGCTGTGGATCTGCTCTGTTAACTGGGATGAGTCCCACATGTCTGCCCGCACCGACCACGTGTTTGGGGACAGCGACCCCTGCTGGACGCGCCCGTTGTCTCGGCTTGGTAGTGCATCGTGCGCACAATACAATACGCGTTTGGGATTTAAAACTGCTTTATGGCTGATTATAAATTCCACCTCCAGTGCTTTTTAATGCAGCGGCATGGGCCTGAAATGATGATCTGCAAGTGAGTCCGTGTTTCAGCTGAATTCATGATTACACCCACTGCACTGACCGGGCCCGGCCGCTGGGAGGGCGCTATTGCAGCAGATATTTTGCATGCACCCTATGCCGACAATGGCCGATCACTACTGaatgtttctccttttttcccttCAAGGCTAACATGTTTTTCTGCTTCCCCTCTCCTCCTACAGGGACATTGAGTCTGCAGGAAtgagcccctctctctctcagGCCTCTCCTCCCGCTGCCTCGCTCTCCTGACCGGAGAGGGAACTCACTTCATTCTGCCTCTATGCATGTTGTAGTTCACGTGAAgtaattgtctgtatgtgtattttttaaatctgaccatcttcaataaaaatgattttgtgaaattctgtatttgtgtttgtgtgagattTGAGATCTGTGTGCATTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011948 False 240 mRNA 0.56 4 7136371 7140132
TU167581 False 744 lncRNA 0.46 3 7135868 7137565
TU167582 True 1433 lncRNA 0.48 3 7135868 7137565

Neighbor

gene id symbol gene type direction distance location
AMCG00011946 NA coding upstream 6387 7122970 ~ 7129481 (+)
AMCG00011947 NA coding upstream 25112 7103316 ~ 7110756 (+)
AMCG00011954 NA coding upstream 41740 7093100 ~ 7094128 (+)
AMCG00011939 NA coding upstream 244914 6877975 ~ 6890954 (+)
AMCG00011933 NA coding upstream 273199 6859874 ~ 6862669 (+)
AMCG00011955 NA coding downstream 31349 7171481 ~ 7176162 (+)
AMCG00011959 NA coding downstream 148915 7289047 ~ 7346943 (+)
AMCG00011958 NA coding downstream 206818 7346950 ~ 7361064 (+)
AMCG00011963 NA coding downstream 231052 7371184 ~ 7373535 (+)
AMCG00011962 NA coding downstream 242843 7382975 ~ 7383970 (+)
G133583 NA non-coding upstream 17018 7118297 ~ 7118850 (+)
G133574 NA non-coding upstream 22801 7112364 ~ 7113067 (+)
G133577 NA non-coding upstream 39941 7095554 ~ 7095927 (+)
G133559 NA non-coding upstream 240791 6893978 ~ 6895077 (+)
G133536 NA non-coding upstream 248885 6863320 ~ 6886983 (+)
G133617 NA non-coding downstream 74103 7214235 ~ 7214462 (+)
G133642 NA non-coding downstream 214238 7354370 ~ 7354965 (+)
G133669 NA non-coding downstream 369617 7509749 ~ 7519294 (+)
G133681 NA non-coding downstream 405151 7545283 ~ 7556712 (+)
G133682 NA non-coding downstream 406512 7546644 ~ 7547755 (+)
AMCG00011917 NA other upstream 482137 6644876 ~ 6653731 (+)
AMCG00011909 ccnb1ip1 other upstream 575206 6545388 ~ 6560662 (+)
G133327 NA other upstream 646660 6483947 ~ 6489208 (+)
AMCG00011876 NA other upstream 875479 6255950 ~ 6260389 (+)
AMCG00011873 NA other upstream 1033857 6084852 ~ 6102011 (+)
G133619 NA other downstream 96809 7236941 ~ 7242300 (+)
G133667 NA other downstream 364950 7505082 ~ 7508751 (+)
AMCG00011971 NA other downstream 419531 7559663 ~ 7575192 (+)
AMCG00011987 NA other downstream 785004 7925136 ~ 7928238 (+)
AMCG00011986 LOC107376962,LOC107102122,LOC103472755,LOC103153162,LOC106951371,LOC106916934 other downstream 820566 7960698 ~ 7976097 (+)

Expression


Co-expression Network