AMCG00011949


Basic Information

Item Value
gene id AMCG00011949
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7144147 ~ 7153383 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011949
GTCGTATTGACCAGACGAGTGGTGGGTTTCTTTGCAAAAACCAAAATGAACTGACTTGTCACCGAAATCCTGGGCTGTACAGGCATGATGCACTTACTGTAACAGCATGAAGGAAATATTTTCCCTGTAACCCAAGAAGCGGGAATTTCCGTTTTGATGCAAGCGtggaagaaagaaacagaaacgtCATTATTCAAAATCACCATCCCGCCCTCTGATTGGACGGCGACATTGAGGCGGGCGTGTGACGTCAGAGCGCCCACAGACACAGGGCCGGCGCTTCCTGGCTGTGTGGGTTTGAGGTGAGCGGCGCAGGAGCAGCGCCCGTTAACCGTCAAAATACAGCAAGAAATCGCGTTTAGCAGTAAGAAGTGTGAAAGGGACTATCGTTGGGTTtttagtatatatttgtattattaaaaacatcctACCTGCATTGAACAGCCATGGGGACGCGGGCGAGCAGGTTTCAACAGGATGCCGGGACTGTGTTCGACAAAGACGGGCTCAGGCGAGACTCGTACCGGCGAGTTCGGGGCAAAAGGCCCACAAGCCTGGTGGTGGATTTCTCCGGCAGCTTCGACCCCGCGTCCGAGCCGAGCCAGACCCGTGCGGAGGAAGGAGGGGACTCGGATCGGGGGCGGTCGGCGGCGGGCAGCGAGGGCAGCCCCAGCCCCGCCGAGAGGATCGGCACAGAGGCCCTCCCGGAGCAAGGCAGCAGCGGCCACAGTGCCGGCGACAGTGCGACGCCTTCAGCCCCCGGCGCAGAGCGACTGTCCGGGGACGAAGCCGCCCGGGTGACCCTGCGCACTTTCTCCGAGCGGCTCCCGACGGGGCGGCTGTCCGGGCGGAACCTCGCTACACGATCGGGCCGGGTCCGCGGTTCCCACGCCCGGCCTTTGTCTGAGGCTTGGGTCGGCGTGTACAGGGTCAACACCAGGCATGGAACCATCAAGTGCCCATTCTGCACAAAGCCGTTTCCCGGGGGGCGTTTTGAAGAGCACCTGCTGAGCTGCCTGACCGCCCCCTCCCTGCCTTACAACAcgGACACCCTGTACAAAGACAGCGGGGAGTGCTCCATCTGCCTGGAGGACCTCGTCCAGGGCCAGACGATAGCCCGACTGGCCTGCCTTTGCATCTACCACAAGAGttGTATAGACTCGTGGTGTAAAGTCAAGCCTTGCTGCCCTGAGCACCCTTTCGACTGAGGAGCGACACTGCAAGGCACTTTTCAGGAATTCACACTTggctgggaaaacaaaaacaacaaggggggaaaaaatatgaaaaacgtggacaaaaaaaaatgatttgcactagaactaaaaaaaaaaaaaacaggaagcagCAGATTGAATGGGGGATGCTGACAAGAACTGAGATGGGAGCCGGGAGGAGGGTTCGTGGGCCAATGCGAATGCTTAACCCTGGCCCGGCCCGGTCTGGCCTAATTAAACTCCAGCCAAGCCCGGAGCTGTGTGCTCTGAACATGGGTGCCATGTGCCACACGTGCtgtgagagggagagcgaggagatggagagagggatgaaGGGCTGGAGGACTGAAGAAAGAGAACCCAGGAGGGATCCCATTGCTTCATTGCTTCATTTCTTACCGGAACAGGAAGGAATGGAGGGGGGAGACCCAATACCATGAAGCCTTAACCCTCCTCCCCATAAGAGGGGTGGAAGGAAGGAAACACCCCAAAAAATAAGGACACCACAATGGAGTGTGGGTCTAGTCTatctggggagggaggggagtggGGTCTTGAGCTGAGGATTGTGTGCCACGTTCCCATTTAAAGACTTCAGGATCTGTGCTTAACCTGTGAATCTGCTGGATTGCTAAAGGACAGGGGCTCCCCAGTGTATTCCTTTTTATACAAGATCATCAAACGCTCCGGTCTGGTGCTCTCCCCACTTTGTGCCAAAAAGGGAGCGAAAGCCATTTGCTGCACAGTGGACAACCGAGTTTCTCTTCCTCCCACTTGCAGTTGCTCATGtattatctgtgtgtttttgccCTTTGTAAAGTATTGAACCGTTGAAATAAGAGCTTCATTGATTAGGTTGCCGCTGTCTGCAGTCATTTACAAACTGTTCCATCAAAACCCTTCCTAAAAGCTTTTGCATTGAGTTTGCGttcagtttcattattttttttccccagttggCGTAAGTCTGTCTCTGGGAAAGACtggcatgtttttttgtatgttttttggtcttgtttttctctttctaaacTGGCAGTGTTGGTCCACAGTTTGACAGCTGCACCAGTGCGCCTTAATGTAACGCGTGAGaccatgtttttttcagttacaCCGGCCGGCTCAGTCTGTTACAACGGACAGCTGCGATCGTCATTTAGCTCCCCGACTGTTTCATTAGTCTGAGTTCACCCGAGCTGGTTCTGCCTGTTCTGTAGCTGCAGTCACAATGTCACACTGTTCTCCGACTAAACTAGACGGTTTGTGCGTTTCCTTGAAGTGCTTGCTTAGTCTCGCAcagtgcatttttgttttgaagcgGGGTACCTGTACCGACTCGTTTTGTGTTCTGCCTACGGGAAGGTGCCTGCGTAGGTTTTCAATGCGGTTTAAGTGCTCCTTGAGTTACGGATTAGCTTTgggaaga

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10694 ZNRF1_2; E3 ubiquitin-protein ligase ZNRF1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011949 True 2643 mRNA 0.53 5 7144147 7153383

Neighbor

gene id symbol gene type direction distance location
AMCG00011952 NA coding downstream 8940 7131863 ~ 7135207 (-)
AMCG00011950 NA coding downstream 22134 7112506 ~ 7122013 (-)
AMCG00011951 NA coding downstream 66675 7076740 ~ 7077472 (-)
AMCG00011953 NA coding downstream 86631 7054361 ~ 7057516 (-)
AMCG00011944 NA coding downstream 124331 7018902 ~ 7019816 (-)
AMCG00011956 NA coding upstream 30286 7183669 ~ 7184139 (-)
AMCG00011965 NA coding upstream 244134 7397517 ~ 7398476 (-)
AMCG00011966 NA coding upstream 253860 7407243 ~ 7409540 (-)
AMCG00011964 NA coding upstream 263529 7416912 ~ 7434130 (-)
AMCG00011967 NA coding upstream 300215 7453598 ~ 7454226 (-)
G133607 NA non-coding downstream 6623 7135868 ~ 7137524 (-)
G133591 NA non-coding downstream 77475 7066413 ~ 7066672 (-)
G133571 NA non-coding downstream 173439 6970293 ~ 6970708 (-)
G133547 NA non-coding downstream 287448 6856221 ~ 6856699 (-)
G133529 NA non-coding downstream 315926 6827982 ~ 6828221 (-)
G133714 NA non-coding upstream 397912 7551295 ~ 7575147 (-)
G133891 NA non-coding upstream 850635 8004018 ~ 8052245 (-)
G133915 NA non-coding upstream 1034906 8188289 ~ 8188693 (-)
G133997 NA non-coding upstream 1277605 8430988 ~ 8483657 (-)
G134069 NA non-coding upstream 1649024 8802407 ~ 8802986 (-)
AMCG00011941 NA other downstream 246320 6892659 ~ 6897827 (-)
G133526 NA other downstream 319559 6824264 ~ 6824588 (-)
AMCG00011928 NA other downstream 373853 6760407 ~ 6770294 (-)
AMCG00011924 emc4,tmm85 other downstream 403611 6663132 ~ 6740536 (-)
AMCG00011920 NA other downstream 512345 6607329 ~ 6631802 (-)
AMCG00011957 NA other upstream 60854 7214237 ~ 7240360 (-)
G133712 NA other upstream 333286 7486669 ~ 7549652 (-)
G133713 NA other upstream 339487 7492870 ~ 7500924 (-)
G133715 NA other upstream 391972 7545355 ~ 7556708 (-)
AMCG00011974 NA other upstream 498173 7651556 ~ 7676231 (-)

Expression


Co-expression Network