AMCG00011976


Basic Information

Item Value
gene id AMCG00011976
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7779226 ~ 7782991 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011976
ATGGCAATGTCTGGATCACTCCACTTACTTCCCAGAGGCCTCAAGCCAATAGGCAGCAGTGCAGAAGACAAGGTGGAGACGGACgggaaggagaggaaggaggaagaagaagaagaagaagaagaagaatgtatACGAATATTCCGGAATGAGGAATACCCGGCTGAGCTGTTCTGCACTCTGCTTGAATTCCGGGAGTCTGGAGTGCTCACTGACCTCACTCTGCGAACCGCGGATGGGGGTAGCTTTGAAGTTCACGCCCCTGTAATGGCTGCAGTCAGCTCCCTTGTTAAGGACCATCTCGACACTGTCTCAGAGCTCTCCCTGGGCCCTGGAGTGAGCAGAACCGGGCTGGCCGCAGTGGTGGACTTTGCATATACTGGGAAGATCGCCGGGATGACTGAGGAGATCGTGGCAGAGTTGAGGGCCGTGGTGGAAGCTCTTGGGGCCCCCAGGGTGCTGGATCTGTGCCGTCAAACTGAGGAGAGCACTAAGGGGAGCAGCTCAACGTGTGATCAGAGACTGGGCAACTTGCTGGCTATTGCAGAGCTGCGGGGGGAGTGGCTGGGCTGCGATGTGGTCCTGGAGACGGGAGGCAAGTGTTTCCACGCTCACAGGGTCATCTTAGCAGCTGCCTTTGACTACTTCCGGGGCATGTTCATGAGCGGGATGCGGGAGGTCAGCCAGAGCCGTGTGCCCCTCCTCTCCCTCGGTGCCCAGGAGCTCTCCGCCCTGCTTTCTTGTGCCTACAGTGGGAGCCTGGCACTGGGCTGGGGTAACGTGTTTGAGCTcacccctgctgccctgcaGCTGCAGGCTGGGGCCGCCCTGCCACTCTGCCTGGGCTTCCTGCAGTGTGAGATGGATGCCCACTCCTGCCTCGATGTGGCAGCATTTGCGGAGGCCTATGGCTTGGCAGAGCTGGGGGAGCAGGCGGAGGACTTTGTGTTGCGCAACTTCCAGGAGGTGGGGCAGACCCCCAAGTTCCAGGACCTCTCCCCCGAGCGGCTACGGCACTACCTGGCCCAGGACTCTCTGTGCGCCACCAGTGAGCTCGCCGTGTTCCGCGTCCTGGTCAGCTGGATCCAGGCTGTCCCTGAGGGCAGGCTGGGGTTGGCGGGGGAGCTAATGAAACTGGTCCGATTCCCCCTCATGACCTTCCGGGAGTTCCGGGAGGTGCGGGCGGTCACCATCACCCTGGAGCAACAGGGATCTGCAGAGCTCTACCAGGCTGCTCTGAAAGAGTTTGGCTTCACCACCGACAGCGTCCACAAGCACTGCCGGGTCCGCCAGCCCCCCTGCACCCTGGTGCTGGTGGGGGGGGATCAACTGGCCCCCGATTTTGGGCGCCGCCAGATCAGCTGCGACCTGTGGTTCATCAATGCGTTGCGCTCCAGCACTGGGCTGGTGAAGGAGATTGAGTGGCGCCAGCTGTCTGCCATGCCACCACCTGCCCGCTTCCGGCATGGGGTTGTTGTCCTCAACAACCGGCTATACATGCTTGGGGGCAGCCACTTCTATGGCAAGAGTGACACGCTGCGTTCTGCCTACCGGTATGATCCAATCGAGGACAGCTGGCAGAGGCTGGTGGACATGCAGGAGCCCCGCAACTACAGCTCAGTGCTGGTGCGGGATGGACTGATCTACGTCCTGGGGGGGGACAGAGATACTGAGCACAACCTGGACAGTGTGGAGTGCTACAACCCCACCACTGACTGCTGGAGGTTTGCCCGGCCCTTGGACCAAACCTTGAGTGGGCAGGCTGCTGCCACCTGGGCAGGGGAGATGTACGTGTCAGGGGGCTTCAACTGCCGATACCAGTGCCTGGTGTCCCTGTTCCACTACCACCCAGAGAGAGGCACCACCTACCTGGCCCCCATGAGCCAGGAGCGGGCGGAGCACGTGATGGAGGCCATGGGGGGGAGGCTGTACGTGGCCGGGGGGGTGCGCGCACAGGGGGAGTTCTACACTGACCAGCTGGCCTGTGAGACCTACGACCCCAGCACCGATCTTTGGAATGGCTTCAGCCCCCTCCCGCTGCCCCATGTCAACGCAGCCTCGGCCGTCCTTGAGGGCAGGTTTTATGTCTTGGGAGGGTACTGCCAGGAGGATTACAGCGAGTCCACACTGGTCCACCGCTATGACCCCCTGACCAGCCGTTGGGAGAACGTGGGCAAGACCCCTGGCCCCAACACTGACATCCGGGCTGCCGTGCTCCAGCTGCCCTCACGATTGCGCCAGTGA

Function

GO: NA

KEGG:

id description
K13957 KLHL33; kelch-like protein 33

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011976 True 2244 mRNA 0.62 4 7779226 7782991

Neighbor

gene id symbol gene type direction distance location
AMCG00011977 NA coding upstream 24511 7695013 ~ 7754715 (+)
AMCG00011972 NA coding upstream 95973 7599508 ~ 7683253 (+)
AMCG00011968 NA coding upstream 200878 7577356 ~ 7578348 (+)
AMCG00011960 NA coding upstream 297596 7471715 ~ 7481630 (+)
AMCG00011961 NA coding upstream 327555 7441388 ~ 7451671 (+)
AMCG00011975 NA coding downstream 2859 7785850 ~ 7788725 (+)
AMCG00011979 NA coding downstream 8022 7791013 ~ 7803080 (+)
AMCG00011981 NA coding downstream 33105 7816096 ~ 7820392 (+)
AMCG00011980 NA coding downstream 95184 7878175 ~ 7884261 (+)
AMCG00011985 NA coding downstream 148804 7931795 ~ 7955013 (+)
G133665 NA non-coding upstream 204061 7551295 ~ 7575165 (+)
G133681 NA non-coding upstream 222514 7545283 ~ 7556712 (+)
G133682 NA non-coding upstream 231471 7546644 ~ 7547755 (+)
G133669 NA non-coding upstream 259932 7509749 ~ 7519294 (+)
G133642 NA non-coding upstream 424261 7354370 ~ 7354965 (+)
G133783 NA non-coding downstream 47573 7830564 ~ 7843471 (+)
G133820 NA non-coding downstream 219789 8002780 ~ 8003512 (+)
G133825 NA non-coding downstream 279602 8062593 ~ 8117249 (+)
G133832 NA non-coding downstream 296764 8079755 ~ 8100437 (+)
G133833 NA non-coding downstream 337908 8120899 ~ 8124699 (+)
AMCG00011971 NA other upstream 204034 7559663 ~ 7575192 (+)
G133667 NA other upstream 270475 7505082 ~ 7508751 (+)
G133619 NA other upstream 536926 7236941 ~ 7242300 (+)
AMCG00011948 NA other upstream 639094 7135868 ~ 7140132 (+)
AMCG00011917 NA other upstream 1125495 6644876 ~ 6653731 (+)
AMCG00011987 NA other downstream 142145 7925136 ~ 7928238 (+)
AMCG00011986 LOC107376962,LOC107102122,LOC103472755,LOC103153162,LOC106951371,LOC106916934 other downstream 177707 7960698 ~ 7976097 (+)
AMCG00011993 NA other downstream 245072 8028063 ~ 8037681 (+)
G133822 NA other downstream 269133 8052124 ~ 8055021 (+)
AMCG00012006 NA other downstream 595342 8378333 ~ 8397041 (+)

Expression


Co-expression Network