AMCG00011980


Basic Information

Item Value
gene id AMCG00011980
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7878175 ~ 7884261 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011980
CTTGTCGCAGTCTGGGATTACATCTAATAATCCGTTGTCCCGTTGCTGTATGTCCACCCTGTAGTATGTGGTGGTAGTAGCGGGGCACCTGCGTGAAGTACCGCGATAGTGACCGGTGCTGCACACCTCGCCGTACCGGGGACCACCGCGGTGACGTCATCGGCGGCACCGGTGTGACCGTGCAGTGAGTCGCAAGGGGATGAGGCGAGAGGAGTCGGACTCTAACGGCCAGCTGTACTCCTCACCGGACACCTCAGAGCAGGACTGCGAGACCTGTGTAAAAGGGGAGGAGGGCGGGCGCTCCAGAGGGCTGGTGACTCGATTCTCAGAGGGCTACGGCACCGAGGCTGTCCCTCAGGGAGAGAGCGACGCGGACGCCGATATAGAGGACACTGACAACAGGCTCCAGGAGGCGGAGTCCCTGCAGCGCATCAGCTCCAAGCGACGTCGCCGCCAGCGAATCACCAAGCAGGACACCACGGAGAGCGAGGACGACGGGGGGCGGAGCCACAGGgaGAGCGTGTCCCAGGTTCGTCCGCTGGTCCTGGGCCGACCGTGCTCGGGGGGCTCTGTGTGCCCCCAGCCTGGGCCAGGGGCCAGTGTGGGTGGGAAGGGGGCAGTGATGTGGCCCTCCAGCCTGCTGCCCTGGCCCCTGGCCCTGTccctcctcctgctccctctATCCATCCTGCTGCTGATGGCTCTGTTGCCCCTCGTCAGCACGTgaacccccccccactccccctctctctctcactccccctgGCTCTTTCATACTCtcactctccatctctccctctgtcttttgTCTCTCCATccattttccttctcttcctctcccaaTTCTGTGGGACCTCACTTACTCAactttccctccccctctctctcaccttttCAGCTCTCTCATCGCGCCcagactctctctcttctcactcatttacacactgtaacacattGAACAGTTCCCAGTtctgtatctctctccctcccactctttccctctctctctccctttctcatTCTCACACGCACTGCAACAGACCTCTCCAGCTAGCACCCCTCCCCTGTCTCCGATTCTCTCCCTCGCACCAACGCGCTCGCAGTTCACACCGAACAGCTCAGCACCTCCCCCGACCTCCACCCCCACCCAGACACAGACTCGCCAGAAGcaccctgctctctctctccgctgCCAAAGCCCGGCACCACTTCAGTTATGTAACAGAGAGCTTTTGCACAGAGCAGGAGaccctgtactgtactgctggaCACCCCTGACAAAGACGTGattaaggaaaaaagtaaataaagtagaGAATGTGTTGGTGCACATGAGCTACAGAGAGGAGCAAAACTATGTCCAGGTGAGGCGGGAGCACAGAGGCGTGAGCGAGGAGCGCGAGGGCGAAACCCGGTTCTGAACACTGTGAGCTGACGAGGGGGAAATGTACCGTCCACTGTCTAACCTGCTGTACCATGCTGAGCTTTGACAACCAGTGACTGAAACCCAGTGGGACTTTTACGCTCTTCTCTCCCCatatccccctcccccagcagTGGATATGGAAGGGGGCCACTCAACGATTGTGTTGCCTTCACTCGGCTACATCATCCAGACCCCCCTCTCAGCGCCAGGGCTCCGGTCAGTTGGcgcagtgtggagtagcagaTTTGTCACCGTGCTGGGGAGGTTGGCACCCAGAGGAATGCTTGAGATGACGGTTCGATGGCGGCGGGTGGGGTCTGACTGCACACGCTACCCTGACGTTGAATGCTTCTCCCCTCAATGATCGACACATGCTGGGGGGTCTCGGCTGCTGCAGCAGTGGACGCTACCCAGCAATAAAGACACGCGGTGGCCCCCGCTAGAAGCATCCCCTCTCGCACTGTGCAAAGACTCCTGTGTGAATCAATGCCCCTTCCTGCTGtgaatcattttcttttcaactttttatttatatagtttgtttCTCACCAGCCCTCAAGCCAACACTGtttccctccccaccccaccccaccccacccccacaaagCCTCAGGACACGGAAGAACcaactgcattttgtttttgttttcatttgtgtgtgttttttttgcaaataataaaatattgttttctccTG

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011980 True 2123 mRNA 0.57 5 7878175 7884261

Neighbor

gene id symbol gene type direction distance location
AMCG00011981 NA coding upstream 57783 7816096 ~ 7820392 (+)
AMCG00011979 NA coding upstream 75095 7791013 ~ 7803080 (+)
AMCG00011975 NA coding upstream 89450 7785850 ~ 7788725 (+)
AMCG00011976 NA coding upstream 95184 7779226 ~ 7782991 (+)
AMCG00011977 NA coding upstream 123460 7695013 ~ 7754715 (+)
AMCG00011985 NA coding downstream 47534 7931795 ~ 7955013 (+)
AMCG00011992 NA coding downstream 114967 7999228 ~ 8016887 (+)
AMCG00011994 NA coding downstream 136543 8020804 ~ 8025061 (+)
AMCG00012005 NA coding downstream 513765 8398026 ~ 8401203 (+)
AMCG00012004 NA coding downstream 541759 8426020 ~ 8428680 (+)
G133783 NA non-coding upstream 34704 7830564 ~ 7843471 (+)
G133665 NA non-coding upstream 303010 7551295 ~ 7575165 (+)
G133681 NA non-coding upstream 321463 7545283 ~ 7556712 (+)
G133682 NA non-coding upstream 330420 7546644 ~ 7547755 (+)
G133669 NA non-coding upstream 358881 7509749 ~ 7519294 (+)
G133820 NA non-coding downstream 118519 8002780 ~ 8003512 (+)
G133825 NA non-coding downstream 178332 8062593 ~ 8117249 (+)
G133832 NA non-coding downstream 195494 8079755 ~ 8100437 (+)
G133833 NA non-coding downstream 236638 8120899 ~ 8124699 (+)
G133921 NA non-coding downstream 312558 8196819 ~ 8197029 (+)
AMCG00011971 NA other upstream 302983 7559663 ~ 7575192 (+)
G133667 NA other upstream 369424 7505082 ~ 7508751 (+)
G133619 NA other upstream 635875 7236941 ~ 7242300 (+)
AMCG00011948 NA other upstream 738043 7135868 ~ 7140132 (+)
AMCG00011917 NA other upstream 1224444 6644876 ~ 6653731 (+)
AMCG00011987 NA other downstream 40875 7925136 ~ 7928238 (+)
AMCG00011986 LOC107376962,LOC107102122,LOC103472755,LOC103153162,LOC106951371,LOC106916934 other downstream 76437 7960698 ~ 7976097 (+)
AMCG00011993 NA other downstream 143802 8028063 ~ 8037681 (+)
G133822 NA other downstream 167863 8052124 ~ 8055021 (+)
AMCG00012006 NA other downstream 494072 8378333 ~ 8397041 (+)

Expression


Co-expression Network