AMCG00012044


Basic Information

Item Value
gene id AMCG00012044
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9241689 ~ 9256200 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012044
ctttttacagtCAGAGCAGAATGACCACCGTTGTCCTGTTTCTGTTGGTGATTGCTATCCTACCGGagaaGATTGACACACCAGTAATGGTGGTGGACTCCAATTTCTCAAGCAGTAAAACCTGCAACATTTTGATCACATGCTCTGTGAAGGGAAAACTTTCATCTACCTTCATCTGCAATGATTCTCTGTGCAGAGAGGAGACTAGGAACAAGTCTGCTGCTGTGGTTATCAATGTCTCTGCAGTCGACAGCTTTTTTATGTGCAACGCCAGTAATCACGTCAGCTGGACCCACAGCTCACTAGGGAAGGAAAAGCTCTGTCCAAACACAGAGGGTATCAGTTCAACATATGCTACAGTACAGAACGATGGCCAGGAAAAAAATGCTAAGCTGCCTGAGACTCGGTATACTGTGGTGAGAAAAGACAGATTCATTTCACAGCAAAAAGGAGAGGACCCCACGATCATGGGCACTGAGATCCCAGCCATTGAGTTATATGGATTAAAAGGAGACTCTATTAATCTTGAAGTACAAAGTCATGAACAGTTACAGTTCAAAAGTATTTCATGGAAGTTTAACAAAGTCAACATAGTGGAATACAACACTAAACATGATGAGGTTGATTATCATGATACATACAAACCCAGGGTGGAGTTcagcaaggaaaataaatctctaaCCATCAGAAACCTTGAGGAGACAGACCATGGCCTTTACACAGCAGTAATGGTTAATAACGACAAGGTTGATGTAAATCTTGCAAAGTACAATTTATTCATTCAAGAGAAGATCGGCACAACAGAAATGGTAGTGAACTACAATTCGTCGAGCAGTGAAACCTGCAACGTCTCAATCACATGCTCTGTGAAGGGAAACTATTTATCCACCTTCATCTGCATCAATTATCTGTGCAGAGAGGAGGCTAGAAACTACAACAGGTCTGCTGCTCTGCTCATAGATGTCCACACAGACGGCAGCTTGTTTGTGTGCAACGCCAGTAATCGAGTCAGCTGGAGCCTCAGATCACTTTCTAAGGAAAAGCTCTGTGGGAAACAAAACCAGATCTTGACGGCCATAATCTTGGCTTGTGTCCTGTGCCTTACCCTGGTCATGGCCATCAGTGTTGTAATCAAAATCATTTTCTTCTGCAAGAAAGATTCAGATACAGaTTCTAAGGACATCAATTCAGTCTATGCTACAATAGAGAACACTGGCCAGGAATGGAATTTTAAGCTGCCTGAGACTTGGTATGACACAGTGAGAGCAGACATATTCACCTCACAGCACcaagaagataaataaataaatatagataaataaagagAGAGCACATAGATTTTACAATGGTGGGAGAATAGAAGAGCACTGGATCTCAGCACCTATTCACATGAGGGGAAGATCGGTTGATCCACTGAAATCTGGGTCTGAATCACAGAACAGTTTAAAGACTATATCT

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012044 True 1458 mRNA 0.42 9 9241689 9256200

Neighbor

gene id symbol gene type direction distance location
AMCG00012041 vangl2,LOC107706024,LOC107686095,LOC107702770,LOC107707319 coding upstream 4413 9223227 ~ 9237276 (+)
AMCG00012042 NA coding upstream 37952 9195997 ~ 9203737 (+)
AMCG00012035 NA coding upstream 63793 9168918 ~ 9177896 (+)
AMCG00012036 NA coding upstream 77042 9160818 ~ 9164647 (+)
AMCG00012037 NA coding upstream 96155 9125101 ~ 9145534 (+)
AMCG00012046 NA coding downstream 8809 9265009 ~ 9265814 (+)
AMCG00012047 NA coding downstream 15874 9272074 ~ 9273616 (+)
AMCG00012048 NA coding downstream 49345 9305545 ~ 9307807 (+)
AMCG00012049 NA coding downstream 55222 9311422 ~ 9318636 (+)
AMCG00012052 NA coding downstream 182127 9438327 ~ 9440627 (+)
G134141 NA non-coding upstream 45772 9194562 ~ 9195917 (+)
G134084 NA non-coding upstream 352743 8888717 ~ 8888946 (+)
G134068 NA non-coding upstream 438811 8802523 ~ 8802878 (+)
G134035 NA non-coding upstream 537721 8703749 ~ 8703968 (+)
G134034 NA non-coding upstream 539091 8702349 ~ 8702598 (+)
G134222 NA non-coding downstream 145254 9401454 ~ 9414917 (+)
G134236 NA non-coding downstream 278114 9534314 ~ 9538974 (+)
G134259 NA non-coding downstream 311080 9567280 ~ 9571718 (+)
G134284 NA non-coding downstream 389826 9646026 ~ 9646444 (+)
G134292 eif3f,LOC105905622 non-coding downstream 397652 9653852 ~ 9654600 (+)
G133974 NA other upstream 678475 8561042 ~ 8563214 (+)
AMCG00012008 NA other upstream 721041 8510011 ~ 8520648 (+)
AMCG00012006 NA other upstream 844648 8378333 ~ 8397041 (+)
G133822 NA other upstream 1186668 8052124 ~ 8055021 (+)
AMCG00011993 NA other upstream 1204008 8028063 ~ 8037681 (+)
AMCG00012043 NA other downstream 23788 9279988 ~ 9309931 (+)
G134291 NA other downstream 395149 9651349 ~ 9653234 (+)
G134295 NA other downstream 400157 9656357 ~ 9656727 (+)
G134338 NA other downstream 596690 9852890 ~ 9867143 (+)
G134340 NA other downstream 679726 9935926 ~ 9936411 (+)

Expression


Co-expression Network