AMCG00012054


Basic Information

Item Value
gene id AMCG00012054
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9361028 ~ 9372681 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012054
GTATATGCCTTTGACAGAAAACTTtgacagaaaaaactaaaaactgtaTATAGAAGAGTACAAGAGAGAAGAATCTGACTAACAATAAGCTTTCACAGAGTGCAGGGTTATAGTTTTCTAATAACTTACTGCTCAAAACTAGTTTCATGTCCTGTGAAGAAAATTATGAACTGTCAAAATTAGTTTAGTTCTTGTGCTACATATATGCATGAACGGAAGTGTGACATGCTATGAAAATACTTTAGAACTAAGAGCTATATCTGAATAAGGAAGTAACTCAGACTGTCTTCTTTCCAAAATGGCAATACGgctatacattttcttgctCCTTTCTTATCCACTGAAAAATACTGGAGCTGAAGAAAACATTGACCTGTACAGATTAGAAGGAAAGTCTGTCTGCCTTGATGTGAAAGGACATGATCAGTCAGCATTCAGAAAGTTTACTTGGTATTTCAACAAGACTAACCTCATTGTGGAATATACAAATAGCAATGGGATGTTTGAAGTTATACCGAAATATGAGGGGAAGGTGGAGTTCCACAAGACTAATTTCTCTTTAGTCATCAGTAACCTACATGTGACAGACAATGGAATCTATACagcacaaataaatgatttaaatggaCAAAATATCGACATTATCACATACAAATTAATCATCCAAGaGAAGACGTACAAACCACAATTTAATGTTAGTTACAATTTTTCCACAAGTGACACATGCAATGTCAGTGTGACCTGTTCCAAAGACCAAGCCACTTCTGTTACCTTCATCTGCAATatctctcagtgcagtgaggACACAGTGAGCTACACCAGGTCACCTGCTCTGCTCATGGACGTCTATACAGATGGCAGCTCTATTGTGTGCAACATGAGTAACCAGGTCAGCTGGAGCAACAGCACAGTGGAAGTGAAAGATGTCTGCCCATTAACAGAAACCAaGAAGATGCCCAGACCAGAATTTGAGGTTCTTTACATGTTTTCCACCTGTGACTACTGCAATGTCAGTCTCACCTGCTCAAAAGACCGGGACAATTCTGCCACTTTCACCTGCAGTCGCTCTCAGTGCAGTGAGGATACAGTGAGCTACACCAGGTCTGCTGCTCTGCTCATTGATGTCTACACAGACGGCAGCTTGTTTATGTGCAACGCCAGTAATCAAGTTAGCTGGAGCCTCAAATCAGTTGCAGTGGACAATGTCTGCCCACTC

Function

GO:

id name namespace
GO:0002376 immune system process biological_process
GO:0045321 leukocyte activation biological_process

KEGG:

id description
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012054 True 1216 mRNA 0.40 4 9361028 9372681

Neighbor

gene id symbol gene type direction distance location
AMCG00012050 NA coding downstream 27037 9321611 ~ 9333991 (-)
AMCG00012051 NA coding downstream 63454 9291483 ~ 9297574 (-)
AMCG00012045 copa,LOC106600386,LOC102794619 coding downstream 165319 9178467 ~ 9195709 (-)
AMCG00012039 NA coding downstream 211633 9146127 ~ 9149395 (-)
AMCG00012040 NA coding downstream 242706 9088852 ~ 9118322 (-)
AMCG00012053 NA coding upstream 11745 9384426 ~ 9398409 (-)
AMCG00012068 NA coding upstream 179880 9552561 ~ 9553607 (-)
AMCG00012066 NA coding upstream 182512 9555193 ~ 9556954 (-)
AMCG00012064 NA coding upstream 184816 9557497 ~ 9560627 (-)
AMCG00012062 NA coding upstream 196947 9569628 ~ 9578057 (-)
G134143 NA non-coding downstream 169736 9154436 ~ 9191292 (-)
G134069 NA non-coding downstream 558042 8802407 ~ 8802986 (-)
G133997 NA non-coding downstream 877371 8430988 ~ 8483657 (-)
G133915 NA non-coding downstream 1172335 8188289 ~ 8188693 (-)
G133891 NA non-coding downstream 1308783 8004018 ~ 8052245 (-)
G134226 NA non-coding upstream 41635 9414316 ~ 9416458 (-)
G134298 NA non-coding upstream 283675 9656356 ~ 9656645 (-)
G134396 NA non-coding upstream 419629 9792310 ~ 9799446 (-)
G134402 NA non-coding upstream 480220 9852901 ~ 10347725 (-)
G134405 NA non-coding upstream 563419 9936100 ~ 9946489 (-)
G134119 NA other downstream 215733 9140824 ~ 9145295 (-)
G134036 NA other downstream 659387 8699411 ~ 8701641 (-)
G134005 NA other downstream 795764 8489200 ~ 8565264 (-)
AMCG00011995 NA other downstream 1301152 8047229 ~ 8059876 (-)
AMCG00011974 NA other downstream 1684797 7651556 ~ 7676231 (-)
G134244 NA other upstream 162587 9535268 ~ 9538892 (-)
AMCG00012058 NA other upstream 239798 9612479 ~ 9626126 (-)
G134395 NA other upstream 418160 9790841 ~ 9791348 (-)
G134397 NA other upstream 437117 9809798 ~ 10244924 (-)
G134400 NA other upstream 474860 9847541 ~ 9848106 (-)

Expression


Co-expression Network