AMCG00012057 (LOC107713649,LOC107698496,LOC107600231,LOC106569574,LOC105905623,LOC107676327)


Basic Information

Item Value
gene id AMCG00012057
gene name LOC107713649,LOC107698496,LOC107600231,LOC106569574,LOC105905623,LOC107676327
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9659749 ~ 9673361 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012057
CCAGATTAGCGCAGATGCGCAAATGAACTGTCTGTGGGTCGCCTACATAGGACTACGCACGTTTGGATGTACATAGCGGTGTCCGTTTCCTTTGCAGAATAATATACGTCTGTATATAGATCATGTGCACTTCTctccttttttaaatctttctgaTCATCAAAAAAAAGGTCTCTGCGTTTATCAGGATGGAATCGACACCTGCGTAGCGAAGGAAAGGGGTTTTAGATGCGTGATGAAatgcccccctctctctttctctctccttcttttgcctatttttttttatttttgactaTGAATAATTGATGTTTTTTGAGGTATGGACGCGATAGtgtgttatgttttatgtttcagCGTGGGAAACCAATTCTAAATATAGATGTGTCCAAAACAAATGGAACGCTGTGTTCTCCCATTGGCACTAACATTCGAATCAACGGGGATTGCTAATCTAAGCGAGCATCTGggttcattaaataaataagaaagagGACAATATATCGAGGACAAGACACACGccaattacagatcaaaaccgGAGCCGGCAGatGTCCACAAACAGTAAGCACTAACATCAGCGCAAAGAAACTCGGCACAAGTGCACAAGGGAAATGGCCCTAGAAAATTCTGCATTCACCTCTCTCCCAGAATCCCTCTCCATGCCGGTGTCTGAAAAAGTGGAGGCAgtggagaagaaggaggaggaggcggtggTGGCGGCGGAGGAGGAACCAATGGGGGTGCTCACTCAGCCTGGTGACCTGGGAGATGTGTTCACCGAAGACACCCCCCCAAATCCCTCCACCAACAACAGGTCATTCCAGTCCAAACTGGCAGCCCGGGAGGCGGAGGCAGAGGCTATTGCTAgacagaggaggaagaagatTCCAGGGGGTGGTTCAGGATGGGAGAGAGGGCGTTGTGGATGGGGGCGCAGCAAAAGACGGAGGCAGCGTTACGTGGAGAAGAACGGGCGTTGCAATGTGCAGCACGGCAATGTCAGAGAGACCTATCGCTACCTGACGGACATCTTCACCACGCTGGTCGACCTCAACTGGCGCTGCTCCCTATTCGTCTTTGTCATGGCCTACGCTGTCACCTGGCTGTTCTTTGGTGCCATCTGGTACCTCATTGCCTACTGCAGAGGGGATCTAGACCACCTGGAAGACAATTCCTGGATCCCTTGTGTGAACAACGTCAATGGCTTCATTTCAGCTTTCCTCTTCTCCATTGAGACCGAGACCACCATTGGCTATGGCCACCGAGTCATCACTGACCAGTGTCCTGTGGGCACAATCCTCCTGCTGCTGCAAGCTATTCTAGGATCCATGGTTAACGCCTTCATGGTGGGCTGCATGTTTGTGAAGATCTCTCAGCCCAACAAGCGAGCTGAGACCCTGGTGTTTTCCAAAAACGCTGTCATCTCCCTGCGCGACGACAAGCTGTGTCTGATGTTCCGCGTGGGCGACCTGCGCAGCTCGCACATCGTGGGCGCCAACATCCGCGCCAAGCTTATCAAATCCAAACAGACACAGGAGGGAGAGTTCATCCCCCTGGACCAGACGGACATCAGTGTGGGCTTCGAGACGGGTGATGACAGGCTCTTCCTGGTGTCCCCGCTGGTAATCTCGCACGAGATTGACCCCTGCTCTCCCTTCTGGGACATGTCCCACGCCCACCTGGACAAGGATGACTTTGAGATTGTTGTCATTCTGGAGGGCATGGTGGAGGCCACGGGAATGACTTGTCAGGCGCGCAGTTCTTACCTGGCTGAAGAGGTCCTCTGGGGCCACCGTTTCAGTCCTATGATGTCCCTGGCAGAGGGCTTCTTCGATGTTGACTATGGAGCTTTCCACCACACCTTTGAGGTGGACACGCCCTCCTGCTCCGCCCGGGACCTCTCCTTGGCCACAGCCCGCCTGGAAGCCCACCTCTATTGGTCCATTTCCAGCCGACTGGATGAGCATAAGTGGGAGGGGCCCCACTTGATGGGCAGCCTAGCCAAAAACTTGGACAGTTCGTCGGCCAATGGCAATAAAGGGATGGAGACCTTGACGGGGATTCCCAGGGGTGGGACGGTGGAGAAGGAGGACCAGTTGGGCCAAGGGGAACGCAATGGTAGCGTGGCCACTGACCAATCGGAATCGGAGGCCTAAGAAGAGGGAATTGTGGTGAGGCGTGGGTAAAGGAGGGGTTTCTGTTTTGCCCAACTGGAGGGGTAGGGAATAGAAGAAACTGACCTTGCAGTCAGTATTTTTTGAATGAAGACTATGCAGGAGCAGGAGCCAAAATGGTGGAAGATTGTGGTTTAATTACTTGTTGTGTAAAATGTACTACAAAATCGATGCCATCTGGGCACCAGCTTAGCCAGTATACTGTAGAGCTCTTTACCATATAAGTGAGGTCAACCAAAATGGCGGCAGTCAGTTAAAAGTAGCTGGAAAGAAAGTGGTTAAAGGGACACACTCTTGGGGCTTCAGTTGGTCTCTTGAATCACTTGTTCACTTGAGCTGAAGAGCTCTTGTTTGTAACTGAGAATGCTGGTGAAAACTACAAATTTCACTTTTAAGAGGACACaatatctgtttgtttattatctgtTGAAGGGTggctttcaaaagcattttcGATTGCCAAATAAGTTCTGATTCGGGGGAACCTTAAAGTTAATAAACCTGAGCTTGTTTTGATCTTGTTCAGTTCAGAAGCCCGAAATTCCCCTTTGGGAATGGAGTTAGCATTAGAGTCCACTTGACCTTGGACAGTCTTTCAGTGCACGTATAAAGTAATACGGCCTAGAAGTGATGAATATCCAAAGTGAGAGTGATGCGAGATGTTGAAGCAGGCAGAAAAGTACCTTTTGTTCCGTATTTGACCTGTGTAGGTAGATAGGTCGGCCATATTTGAATGCAGTGCGGGTGATTATAAAGTGACGTATCCACTTTGCGCCGCTGCCTATCCTAAACCTCATAAGGCGAGACAGTAGAGAGTCCTTTAAACTGAAAGCACAGAAGAGGCCACTAAAAACTCTCCGAGTGGGCTGTCAAAGACTAAACGTCAATGCATTTTTCACAAATGGTTTGCGGTATATATGTATCACACAGTGAAAAAGCCATCTTGCTGTAGCGCTGAGAATCCATACCGCGTGTATTTTGGGGTTTTGTGCCATTTAGAGTCAATTCAAGCATTTTGCACAAAACTagcacagaaataaattaatcattgtACATGAGTATAACCTGACGCTGCAGATTGGTAGCATGTTCATTTAGGCAGCATCCATTTCTATGGCTACTGGAGCCGTGCAGAGTGGCTAAGTTTTTGCCATGTAGATAGAAAAGCAAGTCATTCTATATTTTAGCACATAGATTTGCTGACCATAGATACCCTTGAGAGATACTAGGTGCTGATGGAGTCACTTCCTTATTATTAGGTATGTTTGATTCTTGGGTAGAGAGACAAAGGACTGACTTTATGCCTAATGAGTATGCTAGATGggtagatagatatagatagatattctGTAAAATGCTTCATTTTAGCTGGgctaaaacaaaactgtttttaatgtattaaaactgTATCCACTTGTATTTATTCTTCATGGtaaaactacat

Function

NR:

description
PREDICTED: G protein-activated inward rectifier potassium channel 3-like isoform X2

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015467 G-protein activated inward rectifier potassium channel activity molecular_function

KEGG:

id description
K05002 KCNJ9, KIR3.3; potassium inwardly-rectifying channel subfamily J member 9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012057 True 3621 mRNA 0.48 7 9659749 9673361

Neighbor

gene id symbol gene type direction distance location
AMCG00012067 NA coding upstream 16418 9635496 ~ 9643331 (+)
AMCG00012056 NA coding upstream 114764 9542014 ~ 9544985 (+)
AMCG00012055 NA coding upstream 125508 9508741 ~ 9534241 (+)
AMCG00012052 NA coding upstream 219122 9438327 ~ 9440627 (+)
AMCG00012049 NA coding upstream 341113 9311422 ~ 9318636 (+)
AMCG00012069 LOC106569594,LOC108427136 coding downstream 38861 9712222 ~ 9719197 (+)
AMCG00012075 NA coding downstream 306529 9979890 ~ 9999729 (+)
AMCG00012076 NA coding downstream 326377 9999738 ~ 10004091 (+)
AMCG00012074 NA coding downstream 341483 10014844 ~ 10016191 (+)
AMCG00012079 tmem55b,LOC106569577,LOC107576828,LOC107721780 coding downstream 394195 10067556 ~ 10074742 (+)
G134292 eif3f,LOC105905622 non-coding upstream 5149 9653852 ~ 9654600 (+)
G134284 NA non-coding upstream 13305 9646026 ~ 9646444 (+)
G134259 NA non-coding upstream 88031 9567280 ~ 9571718 (+)
G134236 NA non-coding upstream 120775 9534314 ~ 9538974 (+)
G134222 NA non-coding upstream 244832 9401454 ~ 9414917 (+)
G134305 NA non-coding downstream 3417 9676778 ~ 9679102 (+)
G134326 NA non-coding downstream 96296 9769657 ~ 9770685 (+)
G134335 NA non-coding downstream 174161 9847522 ~ 9923017 (+)
G134346 NA non-coding downstream 213497 9886858 ~ 10428524 (+)
G134341 NA non-coding downstream 254551 9927912 ~ 9946489 (+)
G134295 NA other upstream 3022 9656357 ~ 9656727 (+)
G134291 NA other upstream 6515 9651349 ~ 9653234 (+)
AMCG00012043 NA other upstream 349818 9279988 ~ 9309931 (+)
G133974 NA other upstream 1096535 8561042 ~ 8563214 (+)
AMCG00012008 NA other upstream 1139101 8510011 ~ 8520648 (+)
G134338 NA other downstream 179529 9852890 ~ 9867143 (+)
G134340 NA other downstream 262565 9935926 ~ 9936411 (+)
G134357 NA other downstream 360825 10034186 ~ 10034693 (+)
G134365 NA other downstream 460666 10134027 ~ 10134592 (+)
G134366 NA other downstream 466593 10139954 ~ 10140457 (+)

Expression


Co-expression Network