AMCG00012078


Basic Information

Item Value
gene id AMCG00012078
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10098148 ~ 10100456 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012078
CTTCGAAAAGTCATTCGCTCATAACACTGGTCTTCTTCACAGTGAGAGCAACCTATGAAGATGTTTACGGCACAAGTCCTGattctttttctgtctgtgacctTTATCCATGGTGAAGCAGTTTTATCCCAGTCCCCTACGgttgtctctgtgtctcctggAGAAAAAGTCATACTGGAATGCTCAGTTAAGAATGGCAATGTTGATACACTGTATATGCAATGGATTCGGCAGACCCCTGGGAAGAAACCTGAAGGTGTAATGGGCTTCAAGAAAGGTCAGATCAACAGACCTTCTGCAATACCCAACCGGTTTTTCCCATCCACAAACACAGCCAGGAGCAGCTTTGTTCTCACTGTGAGCAACATTCAAGAAGAAGATGATTCTGTCtattattgctttttgttttacggctcatctggtattcagTCATGGGGAGAAGGAACTCGAATCAAAGTTCTCAAAAGTGGTCTCCCTCGCCCCATCATCCAGCTTTTCCCACCTCCCAAAGGGGAGTCCTCCAGCGCTGACTCGGTGACCCTGACCTGCCTGGTGAGTGGCTTCTTCCCCGGGTTCATCGAAGTGAAGTGGAGCATGGATGGAGCGGTGGTGACCGAAGGAGTCCACACCAGCCCTGTGTCTCTGGGCAGCATCGATGGCAACACCTACGTGGTCAGCAGCTACATGAAGCTGCCTGCCACTGACTGGGAGACGCACAATGTGTTTTCCTGCACTGCCCTGCACGAGTCCAGCCAGACCCCGGTCACAGGATCCATCACAAAGGATAAGTGCTGAGAGCCAGCATGACCACAGCTGTTTAACAGGCTTCATGCAAATGTATGACTAAAACCTGTCcaaaacaaatgcttatttTGCTAATAAGTATAAGTTAATCAaggtataaaaacacaataggcTAATGGCACCAATTAATGCATGTCTgatacacttttatatttttaattgattgattccCTATACTAATCACCTGCCTGACAGTTGGAAAGTTGGAACCGGTTGCTTTTAAAAGCCAACCTCCAGACAGCAAATGGGGAATTAGTAGCTGAGGATGTGGTTGGGGATGTTCTCAAtcaatctttaaaatgtcaaacgTAATCCTAAATTGCAGCAATGTCAATTCTCATACGCAACAAATCAGAAAGCAGCCCAGTCTCTCTGACCTACTGTCACATCTGATtgcaaaaaacatgaaagcgcTATTGCATAGAACTGCTACGTAGTCTTatgtttaaactaaaaataaagttgtAAACATTtga

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012078 True 1280 mRNA 0.45 3 10098148 10100456

Neighbor

gene id symbol gene type direction distance location
AMCG00012079 tmem55b,LOC106569577,LOC107576828,LOC107721780 coding upstream 23406 10067556 ~ 10074742 (+)
AMCG00012074 NA coding upstream 81957 10014844 ~ 10016191 (+)
AMCG00012076 NA coding upstream 94057 9999738 ~ 10004091 (+)
AMCG00012075 NA coding upstream 98419 9979890 ~ 9999729 (+)
AMCG00012069 LOC106569594,LOC108427136 coding upstream 378951 9712222 ~ 9719197 (+)
AMCG00012082 NA coding downstream 164644 10265100 ~ 10280532 (+)
AMCG00012083 NA coding downstream 238372 10338828 ~ 10353743 (+)
AMCG00012084 NA coding downstream 263500 10363956 ~ 10392598 (+)
AMCG00012087 LOC101065589 coding downstream 442957 10543413 ~ 10545945 (+)
AMCG00012086 LOC107749202,LOC104951120,LOC107733393 coding downstream 451214 10551670 ~ 10564853 (+)
G134341 NA non-coding upstream 151659 9927912 ~ 9946489 (+)
G134335 NA non-coding upstream 175131 9847522 ~ 9923017 (+)
G134326 NA non-coding upstream 327463 9769657 ~ 9770685 (+)
G134305 NA non-coding upstream 419046 9676778 ~ 9679102 (+)
G134292 eif3f,LOC105905622 non-coding upstream 443548 9653852 ~ 9654600 (+)
G134369 NA non-coding downstream 93938 10194394 ~ 10244729 (+)
G134339 NA non-coding downstream 98695 10199151 ~ 10200970 (+)
G134378 NA non-coding downstream 169224 10269680 ~ 10270054 (+)
G134495 NA non-coding downstream 494393 10594849 ~ 10595406 (+)
G134498 NA non-coding downstream 498083 10598539 ~ 10598841 (+)
G134357 NA other upstream 63455 10034186 ~ 10034693 (+)
G134340 NA other upstream 161737 9935926 ~ 9936411 (+)
G134338 NA other upstream 231005 9852890 ~ 9867143 (+)
G134295 NA other upstream 441421 9656357 ~ 9656727 (+)
G134291 NA other upstream 444914 9651349 ~ 9653234 (+)
G134365 NA other downstream 33571 10134027 ~ 10134592 (+)
G134366 NA other downstream 39498 10139954 ~ 10140457 (+)
G134337 NA other downstream 122548 10223004 ~ 10259224 (+)
G134373 NA other downstream 152354 10252810 ~ 10307839 (+)
G134343 NA other downstream 202817 10303273 ~ 10317818 (+)

Expression


Co-expression Network