AMCG00012079 (tmem55b,LOC106569577,LOC107576828,LOC107721780)


Basic Information

Item Value
gene id AMCG00012079
gene name tmem55b,LOC106569577,LOC107576828,LOC107721780
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10067556 ~ 10074742 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012079
CCGGTATGGCGGACGGCGAGCGATCCCCGCTCCTCTCCGATCTGAGCGATGGAGGTCTCAGCGGCGGCGGCCCCGGCGGCCCGCTGCCCACCGCCCCACCGTACGGGCTGCCGAATAAGCCGCAGAGTTTCCCTGGGTTCCCCAGCTCCCAGCCCTCGGTCCTGCCCGGAGAGGACCCCCCGCCCTACTCCCCTATGACCTCCCCGGAGAGTGGCAGTGCCCCCATGATCAGCTGCCGCGTGTGCCAGTCCCTCATCAACGTGGAAGGCAAGATGCACCAACACGTGGTCAAGTGTGGTGTCTGCAATGAAGCAACGCCCATAAAGAACGCTCCGGCCGGGAAGAAGTACGTGCGCTGTCCCTGCAACTGCCTGCTGATCTGTAAAGTGACGTCACAAAGGATAGCCTGCCCACGACCATACTGTAAAAGAATAATCAACCTGGGCCCGGTGCATCCTGGGCCGGTCAGTCCCGAGCCGCAGCCCGTCGGGGCGCGAGTCACCTGCGGACACTGCAAGAACACTTTCCTGTGGACAGAGTTTACAGACCGGACGTTAGCCAGATGTCCACACTGCAGAAAAGTGTCCTCAATTGGGAGGCGATATCCCCGGAAGAGATGTCTCTGGTGCTTCCTGGTGGGCCTGCTGTTTGCCATTGTTGCCGGTGCGATCGCAGTGGACGATGAGcaaaggggggaggggtgggggaggcaTGTGTAG

Function

NR:

description
type 1 phosphatidylinositol 4,5-bisphosphate 4-phosphatase

GO:

id name namespace
GO:0005765 lysosomal membrane cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K13084 TMEM55; phosphatidylinositol-4,5-bisphosphate 4-phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012079 True 719 mRNA 0.62 7 10067556 10074742

Neighbor

gene id symbol gene type direction distance location
AMCG00012074 NA coding upstream 51365 10014844 ~ 10016191 (+)
AMCG00012076 NA coding upstream 63465 9999738 ~ 10004091 (+)
AMCG00012075 NA coding upstream 67827 9979890 ~ 9999729 (+)
AMCG00012069 LOC106569594,LOC108427136 coding upstream 348359 9712222 ~ 9719197 (+)
AMCG00012057 LOC107713649,LOC107698496,LOC107600231,LOC106569574,LOC105905623,LOC107676327 coding upstream 394195 9659749 ~ 9673361 (+)
AMCG00012078 NA coding downstream 23406 10098148 ~ 10100456 (+)
AMCG00012082 NA coding downstream 190358 10265100 ~ 10280532 (+)
AMCG00012083 NA coding downstream 264086 10338828 ~ 10353743 (+)
AMCG00012084 NA coding downstream 289214 10363956 ~ 10392598 (+)
AMCG00012087 LOC101065589 coding downstream 468671 10543413 ~ 10545945 (+)
G134341 NA non-coding upstream 121067 9927912 ~ 9946489 (+)
G134335 NA non-coding upstream 144539 9847522 ~ 9923017 (+)
G134326 NA non-coding upstream 296871 9769657 ~ 9770685 (+)
G134305 NA non-coding upstream 388454 9676778 ~ 9679102 (+)
G134292 eif3f,LOC105905622 non-coding upstream 412956 9653852 ~ 9654600 (+)
G134369 NA non-coding downstream 119652 10194394 ~ 10244729 (+)
G134339 NA non-coding downstream 124409 10199151 ~ 10200970 (+)
G134378 NA non-coding downstream 194938 10269680 ~ 10270054 (+)
G134495 NA non-coding downstream 520107 10594849 ~ 10595406 (+)
G134498 NA non-coding downstream 523797 10598539 ~ 10598841 (+)
G134357 NA other upstream 32863 10034186 ~ 10034693 (+)
G134340 NA other upstream 131145 9935926 ~ 9936411 (+)
G134338 NA other upstream 200413 9852890 ~ 9867143 (+)
G134295 NA other upstream 410829 9656357 ~ 9656727 (+)
G134291 NA other upstream 414322 9651349 ~ 9653234 (+)
G134365 NA other downstream 59285 10134027 ~ 10134592 (+)
G134366 NA other downstream 65212 10139954 ~ 10140457 (+)
G134337 NA other downstream 148262 10223004 ~ 10259224 (+)
G134373 NA other downstream 178068 10252810 ~ 10307839 (+)
G134343 NA other downstream 228531 10303273 ~ 10317818 (+)

Expression


Co-expression Network