AMCG00012083


Basic Information

Item Value
gene id AMCG00012083
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10338828 ~ 10353743 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012083
ATGCACTGTGACTACGAAGCTTTCGACTACTGGGGGAAAGGGACCATGGTCACCGTGAGCTCAGctgcagCAACTGCGCCAACCCTCTTCCCACTTGTTCCCTGCGGCTCTGGGGTGAGTGTGGATCCAGTCAGTGTAGGCTGCCTGGCAACAGGGTTCAGCCCCGATTCCCTGACCTTCGGGTGGAGTGAAGGCTCAAAAGAGCTGACCAACTTTCAGAAATACCCATCAGTGCTTGGCAGCGGAGGCCTGTACTCCATGACCAGCCAGCTGTCCATCCCCAAAGCAGACTGGGAGAATAAGGATAAGATGTTCTACTGCAAGGCCACAAACCCATCTGGAACTGCATCTGCTGAATTGAAaccaccaacaccaacaccacAATGTGATCCGTTGACCACCGACGTAACAGTTACGATTCAGGGCCCAGAGGCGAAAGAGGTTTTCCTGCAGAAGAGAGGCACACTGACCTGCATTGCCCGGGGCTTGGCAGATGAGAATGAGAAGACCATTGCCATAACCTGGTATAAGGACAATGGTAAAAAGCCCCTAGCATCTGTAACACCCACTCCAGAGCTTCAGTATACAGATGATGGACGCATACAGGCAACATCCAGAGTGATTATCAGCAAAGAGGAGTGGAGCAGTAACAGCACCTACAAATGTGTAGTAGCTCACCCGGCGTCCTTTCCTTCTCCAAAAGAAGAAACATACAGGAGAGACAATGGCCATGTGGAGAGGACGCCCTCCGTCTTTCTGCTGCCTCCCTCCTCAGAACAAAACTCAGGCATTAGGGAAGAGTTGCCTCTGACCTGCTTCATCAAAGACTTCTACCCCAAGGATGTGTACGTCTCTTGGCTTGCCGATGATGTGCCTGTCGCGGAGTCTAAGTTCCACACCACCAGCCTGATTGAGGAGGAGGCCGGGAAGTCCTATTCAGTCTACAGCAAGCTTAGCGTTCGGACAAGCGATTGGAACAGTGGCGTCTTTTACACCTGTGTTGTCCACCATGAAAGCACCCCCGACTCAGTGCCCATGATAACCAGAACGATTGATAGCTCTTCAGGCAAGCCCACTTTAGTCAATCTCAATCTCAAAGTGCCCGACACCTGCAGAGGGTAACATCTCCCATGACTGTGCCTCTGTATTGTCTTGTTATTGTGCTTCTGTATTGTAACAGGAATGTTGTGTTGTCTTGTCTGTTGTGTctcttttaacatttttgtgattcaaacttaaaaagcaTACTATGTAGACCAGAATGGTATTGAATACAATGGAGATAGCCTCTGGAACACGGTCTGCACCttcatcttcctcttcctcatcaCACTGTTCTACAGTATAGGCGCCACTGTCACCAAGGTGAAATGAAACCTTTGAAGACATGTCAACGAAGGCTTATGTGATAATGCTTTCAACACAATCTTATCAATGCTTTAATTgagatacattaaataattaattttctatCATGTTGTTAATGTGTTAACCTCATTCTGTggttgtaaaatgtaatcagtGAAACTAATTCAACCTGTAAATATTTGGTTGTGCTTTTGGAGATTTCCTGGCTTTCAAATAAAACTTGTATTAACCCAAGCACAAA

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012083 True 1609 mRNA 0.47 6 10338828 10353743

Neighbor

gene id symbol gene type direction distance location
AMCG00012082 NA coding upstream 58296 10265100 ~ 10280532 (+)
AMCG00012078 NA coding upstream 238372 10098148 ~ 10100456 (+)
AMCG00012079 tmem55b,LOC106569577,LOC107576828,LOC107721780 coding upstream 264086 10067556 ~ 10074742 (+)
AMCG00012074 NA coding upstream 322637 10014844 ~ 10016191 (+)
AMCG00012076 NA coding upstream 334737 9999738 ~ 10004091 (+)
AMCG00012084 NA coding downstream 10213 10363956 ~ 10392598 (+)
AMCG00012087 LOC101065589 coding downstream 189670 10543413 ~ 10545945 (+)
AMCG00012086 LOC107749202,LOC104951120,LOC107733393 coding downstream 197927 10551670 ~ 10564853 (+)
AMCG00012089 NA coding downstream 306159 10659902 ~ 10668786 (+)
AMCG00012096 NA coding downstream 414301 10768044 ~ 10777082 (+)
G134378 NA non-coding upstream 68774 10269680 ~ 10270054 (+)
G134369 NA non-coding upstream 94099 10194394 ~ 10244729 (+)
G134339 NA non-coding upstream 137858 10199151 ~ 10200970 (+)
G134350 LOC108239224 non-coding upstream 158121 9958351 ~ 10180707 (+)
G134341 NA non-coding upstream 392339 9927912 ~ 9946489 (+)
G134495 NA non-coding downstream 241106 10594849 ~ 10595406 (+)
G134498 NA non-coding downstream 244796 10598539 ~ 10598841 (+)
G134556 NA non-coding downstream 496115 10849858 ~ 10853291 (+)
G134615 NA non-coding downstream 613533 10967276 ~ 10982794 (+)
G134692 NA non-coding downstream 879938 11233681 ~ 11233883 (+)
G134343 NA other upstream 21010 10303273 ~ 10317818 (+)
G134373 NA other upstream 30989 10252810 ~ 10307839 (+)
G134337 NA other upstream 79604 10223004 ~ 10259224 (+)
G134366 NA other upstream 198371 10139954 ~ 10140457 (+)
G134365 NA other upstream 204236 10134027 ~ 10134592 (+)
AMCG00012088 NA other downstream 275941 10629684 ~ 10684097 (+)
G134613 NA other downstream 572863 10926606 ~ 10935107 (+)
AMCG00012112 NA other downstream 695322 11049065 ~ 11061030 (+)
G134697 fus,LOC103040960,LOC107658502 other downstream 888486 11242229 ~ 11293899 (+)
G134743 NA other downstream 1082636 11436379 ~ 11446163 (+)

Expression


Co-expression Network