AMCG00012086 (LOC107749202,LOC104951120,LOC107733393)


Basic Information

Item Value
gene id AMCG00012086
gene name LOC107749202,LOC104951120,LOC107733393
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10551670 ~ 10564853 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012086
TCGTTCTTCCAGCCGAAAGCcgtgaaggagaagaaggacgAGAAGGAGAAGGGAAAGAAGGATAAGGTGGCCAAGAGGAGCCGGCCAATCATAGACAGCGAAGACGAGGAGGAGTCAAGTATCAAAGAGGAATCGGAGAACAAGaaggaaaatggaaatgaacCTGTGCCCCAAACCACTGAGAAACAGaacTCGCAGACGTCACCTGCCCCTTCGGGGAAAAGTGCCACTGCTCCAGTCATCAGCTCCTCTGCAGACAGCTCCCCCACCACTGGGACAGCAAGCGTCTCTCCCTCGGGGATCCCCAAAAGACGCACTGCCAAGAAGCCCAAAGGGGAGAAGTCACCCAAGCGCCAGGCGGGAGGAGATGCCAAACGGCAGAAAGACGGGAGCTCGGGCACCGAAGAGGAAGAGCAGGCCTCTCCGAAGAGGATGTCGGACAGCAAGAAAGAGCAGCAGTCGCCCAAACCAGATGTGAAGAAGGCAAAGTCGCCCAAACCGGATGTGAAGAAGGCAAAGTTGCTCAAACAGGAAGCGAAGAAGGCAAAGTCGCCTAAAAAGGAGGAGCAGGAAGAGGAAGGGGACAATGGGAATGTGGAAGAGACTGAAAAGATGGAACCAGCCAAGAGCAAACCTATCAGCAGCTTTTTCGCTCCCAAGAAGGCAGCCGTGAAACTGGAGAAAGCGGAAGAGAAGCCAGCCAATACACTCTCCTCACCAGAGGGCAGTGGGAGTAAAGAAGCCAAGCCGGCCAGTTTCTTTGGCAAGTCAGCGAAGACCGAGTCCTCTTCAGGTACCTCCACAGATTATGACCCCTCCAATCCGAAGTACCACCCAGTGGAAGATGCCTGCTGGAGTCAAGGCCAGAAAGTTCCTTACCTGGCTGTTGCGAGAACCTTCGAGAAGATTGAAGAAGAATCTGCCAGGCTCAGGATCATAGAGATGCTGGCCAACCTCTTCCGCTCAATCATTGCCCTCTCCCCCGCCGACCTTCTGCCCTGCCTGTACCTGTGCCTGAACCGCCTGGGGCCGGCCTTCGCTGGGCTGGAGCTGGGGGTGGGAGAGACTGTGCTCATGAAAGCTGTGGCCCAGGCTACAGGGCGCCAGCTGGACAAGATCAAGGCGGAGGCCCAGGAGAAAGGGGACCTGGGATTGGTGGCTGAGAGTTCCCGAAGCAACCAGCGCATGATGTTCACACCCCCGAAGCTGACGGCCGTGGGGGTCTTCAACAAGCTGACGGAAATTGCAAAGATGACAGGCAATGCATCAATGAACAAAAAGATCGACATCATCAAGGGTCTGTTTGTGGCCTGCCGTTTATCAGAAGCCCGCTATATCATCAGGTCTCTGGGTGGGAAGCTGCGTATCGGCCTGGCGGAGCAGTCTATCCTGGTCGCCCTCGCGCAGGCCGTCTGCCTGACTCCCCCGGGACAAGAATTCCCGCCGAAGGAGGTGAATGCTGGGAAGGGGATGTTGGCAGAATCTCGGAAAGCCTGGCTGGACGAGAAAGCGCTCATCCTTAAACAGACTTATTGCGAGCTGCCCAACTATGATGTCATCCTTCCAGTCCTGCTGACAGAAGGGATTGACGAACTGCCGAAGCACTGCAAGCTCACGCCTGTCATGAAGAGGTTCGACGAGGCGGCCTTTACCTGCGAGTACAAGTACGATGGCGAGAGAGCCCAGATCCACATCCTTGAGAATGGAGAGGTCCACATTTACAgcaggaaccaggagaacaacaCCACCAAGTACCCCGACATCATCTCCAGAATACCTCGGGTCAAGAAGGAGGGCGTGCGCTCCTGCATTGTGGATGCCGAGGCTGTGGCCTGGGACCGGGAGAAGAAACAGATCCAGCCCTTCCAAGTGCTGACGACGCGCAAGAGGAAGTCGCTGGTGCGGGAGCCCCTGTTGAAGCGGCGCGCCCTTCTGAAGGAGAGCTTCGAGGAGAAAGAGGGCGAGTTCGTCTTCGCCAGCGCCCTCGACTCCGACAACACCGATGTCATCGCCGAGTTCCTGGAGCAGTCCGTCAGAGACTCCTGCGAGGGGCTGATGGTGAAAACTCTGGAGAAGGACGCCACGTACGAGATTGCAAAACGCTCCCACAACTGGCTCAAGCTGAAGAAAGATTACCTGGAAGGTGTGGGTGACACTCTGGACCTGGTGGTGATAGGAGCCTTCTTGGGCAAAGGCAAGAGAACTGGGACGTATGGCGGGTTTCTGCTGGCCTGCTATGATGACGAGAATGAGGAATACCAGTCAATCTGCAAGATCGGCACAGGATTTAAAGATGAAGATCTGGAGCAACATTACAACTTTCTGAAGgaacACACTCTGCCTAAGCCCCGCCCTTATTACCGTGTGGACCAGTCAACAGAGCCAGATGTGTGGTTGGAGGCAGTGCAGGTGTGGGAAGTGAAGTGTGCCGACCTGTCACTGTCCCCGGTTCACAAAGCAGCAATGGGATTGGTTGACCCAGAGAAAGGGATCTCCCTGCGCTTCCCTCGCTTCTTGAGGATCAGAGACGACAAGAAACCAGAAGATGGCACCACTGGGGGGCAGGTAGCAGATCTGTACagaaagcagcagcagatcCAGAACCAGGGCAGTGAGAAAGCCGACCTCGAGGACTTCTAC

Function

NR:

description
PREDICTED: DNA ligase 1-like

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0006260 DNA replication biological_process
GO:0051103 DNA ligation involved in DNA repair biological_process
GO:0003910 DNA ligase (ATP) activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K10747 LIG1; DNA ligase 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012086 True 2640 mRNA 0.56 23 10551670 10564853

Neighbor

gene id symbol gene type direction distance location
AMCG00012087 LOC101065589 coding upstream 5725 10543413 ~ 10545945 (+)
AMCG00012084 NA coding upstream 159072 10363956 ~ 10392598 (+)
AMCG00012083 NA coding upstream 197927 10338828 ~ 10353743 (+)
AMCG00012082 NA coding upstream 271138 10265100 ~ 10280532 (+)
AMCG00012078 NA coding upstream 451214 10098148 ~ 10100456 (+)
AMCG00012089 NA coding downstream 95049 10659902 ~ 10668786 (+)
AMCG00012096 NA coding downstream 203191 10768044 ~ 10777082 (+)
AMCG00012097 NA coding downstream 229033 10793886 ~ 10796475 (+)
AMCG00012098 NA coding downstream 238515 10803368 ~ 10804229 (+)
AMCG00012099 NA coding downstream 247844 10812697 ~ 10816328 (+)
G134346 NA non-coding upstream 123146 9886858 ~ 10428524 (+)
G134378 NA non-coding upstream 281616 10269680 ~ 10270054 (+)
G134369 NA non-coding upstream 306941 10194394 ~ 10244729 (+)
G134339 NA non-coding upstream 350700 10199151 ~ 10200970 (+)
G134350 LOC108239224 non-coding upstream 370963 9958351 ~ 10180707 (+)
G134495 NA non-coding downstream 29996 10594849 ~ 10595406 (+)
G134498 NA non-coding downstream 33686 10598539 ~ 10598841 (+)
G134556 NA non-coding downstream 285005 10849858 ~ 10853291 (+)
G134615 NA non-coding downstream 402423 10967276 ~ 10982794 (+)
G134692 NA non-coding downstream 668828 11233681 ~ 11233883 (+)
G134343 NA other upstream 233852 10303273 ~ 10317818 (+)
G134373 NA other upstream 243831 10252810 ~ 10307839 (+)
G134337 NA other upstream 292446 10223004 ~ 10259224 (+)
G134366 NA other upstream 411213 10139954 ~ 10140457 (+)
G134365 NA other upstream 417078 10134027 ~ 10134592 (+)
AMCG00012088 NA other downstream 64831 10629684 ~ 10684097 (+)
G134613 NA other downstream 361753 10926606 ~ 10935107 (+)
AMCG00012112 NA other downstream 484212 11049065 ~ 11061030 (+)
G134697 fus,LOC103040960,LOC107658502 other downstream 677376 11242229 ~ 11293899 (+)
G134743 NA other downstream 871526 11436379 ~ 11446163 (+)

Expression


Co-expression Network