AMCG00012087 (LOC101065589)


Basic Information

Item Value
gene id AMCG00012087
gene name LOC101065589
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10543413 ~ 10545945 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012087
ATGCAGTGTGGTTGCGGCAATGAACCCGTCGGAGCGGCTGCCAGTCCTTACTGGATGAGAGGGATGGTGTTCCCAGAGTGGGCGTACAAGCCCGACTGGACCCCCGGCTCCCGGCAGATCCAGCTCTGGCACTTCATCCTGGAGCTGCTGGCGAGGGACGATCTGAGCGCCGTGATTGGCTGGCAGGGGGACTGGGGGGAGTTCGTCATCCGGGACCCTGAGGAGGTGGCGCGGCTGTGGGGGGCACGCAAGGGCAAGCCGCACATGAACTACGACAAGCTAAGCCGGGCACTCAGGTACTACTATAACAAGCGCATTCTCCACAAAACAAAGGGCAAGCGTTTCACGTACAAGTTCAACTTCACGAAACTGATCCTGGTCAACTACCCGGGCTGGGACGTCAACTCCATGTCTAGGATGTCAGaaaaaaaaacagcatcaacaacaaaaatcctcATCTTCATCATTGCCATCCTCTTTCAGTTTCTACAGAACCTGTTGTTAACCCAGAGGGCCCTGGCGAGCCAGATCACCACTCAGAGAGCAGAGTATCCCAGAGAAATGGCCTACAGCATGGATGGACCGATGAAGAAATCGGCGGTAGACAGAGgTCGTCACTCCATTCACCAGCCCTTCTATCTGCACCCTTGCTGCATACCGACAACCCTTCCCTTTCCGCACACCTCTCCCCTGAGTGGGCGGCTCCCTTACCTGTCAGTCCCACCTCCTCCCAGAGTGAGCCAATCAGACATCCCCTGTGTGCCACCAATCAACCACAGCCTGCACTTTCGCCCTCCCCTCCCGGGCACTCCCATCCAATGGCAGATCAACAGGGGTGGCAGGGGGCgggaggaggtggaggtgggCAGTGGGACTCTGATGAAGAAGGATTGCGAAAAGAAGGGGAAGCTGGAGTGGAAGCTTGGGTTCTCTGCGTAG

Function

NR:

description
PREDICTED: ETS domain-containing transcription factor ERF-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012087 True 939 mRNA 0.57 5 10543413 10545945

Neighbor

gene id symbol gene type direction distance location
AMCG00012084 NA coding upstream 150815 10363956 ~ 10392598 (+)
AMCG00012083 NA coding upstream 189670 10338828 ~ 10353743 (+)
AMCG00012082 NA coding upstream 262881 10265100 ~ 10280532 (+)
AMCG00012078 NA coding upstream 442957 10098148 ~ 10100456 (+)
AMCG00012079 tmem55b,LOC106569577,LOC107576828,LOC107721780 coding upstream 468671 10067556 ~ 10074742 (+)
AMCG00012086 LOC107749202,LOC104951120,LOC107733393 coding downstream 5725 10551670 ~ 10564853 (+)
AMCG00012089 NA coding downstream 113957 10659902 ~ 10668786 (+)
AMCG00012096 NA coding downstream 222099 10768044 ~ 10777082 (+)
AMCG00012097 NA coding downstream 247941 10793886 ~ 10796475 (+)
AMCG00012098 NA coding downstream 257423 10803368 ~ 10804229 (+)
G134346 NA non-coding upstream 114889 9886858 ~ 10428524 (+)
G134378 NA non-coding upstream 273359 10269680 ~ 10270054 (+)
G134369 NA non-coding upstream 298684 10194394 ~ 10244729 (+)
G134339 NA non-coding upstream 342443 10199151 ~ 10200970 (+)
G134350 LOC108239224 non-coding upstream 362706 9958351 ~ 10180707 (+)
G134495 NA non-coding downstream 48904 10594849 ~ 10595406 (+)
G134498 NA non-coding downstream 52594 10598539 ~ 10598841 (+)
G134556 NA non-coding downstream 303913 10849858 ~ 10853291 (+)
G134615 NA non-coding downstream 421331 10967276 ~ 10982794 (+)
G134692 NA non-coding downstream 687736 11233681 ~ 11233883 (+)
G134343 NA other upstream 225595 10303273 ~ 10317818 (+)
G134373 NA other upstream 235574 10252810 ~ 10307839 (+)
G134337 NA other upstream 284189 10223004 ~ 10259224 (+)
G134366 NA other upstream 402956 10139954 ~ 10140457 (+)
G134365 NA other upstream 408821 10134027 ~ 10134592 (+)
AMCG00012088 NA other downstream 83739 10629684 ~ 10684097 (+)
G134613 NA other downstream 380661 10926606 ~ 10935107 (+)
AMCG00012112 NA other downstream 503120 11049065 ~ 11061030 (+)
G134697 fus,LOC103040960,LOC107658502 other downstream 696284 11242229 ~ 11293899 (+)
G134743 NA other downstream 890434 11436379 ~ 11446163 (+)

Expression


Co-expression Network