AMCG00012090


Basic Information

Item Value
gene id AMCG00012090
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10587582 ~ 10591854 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012090
CTTAACTGACAGCTGCATTTACACACATTGTGAAGTTAGCACAAtcttgtatgtgtttttattttccaagacACTGCCAAATACACAATGTCCGATATCCAGCAGCAAGTTCTGCACTTACTCTCAGAGAACCCAGAGGGACTGAGAGTGTGCGACTTCACCGGGGCCTATAACAAATATTACCATTGCAACATGGTCCTCGCTCAGCACGGCTTCAAGAAACTGACCACTCTGTTCGAGCACATGAAGGAGCATGTGGAGATTGTGGACCTGCAGGGGGTGAAAGTGGTCAAGGCCAAGGCTGACCCTAGCCAGGACCTTGAGGATCCAGACCATCAGAATGACCCTGAATCCCAATCATACCTAGAAGACTCCTCTGCAGCAATTCCTCCCCCCGTAACTCCTTCACCTAAAGACCCACCTTTGATCCAACTGAAAAATTCCCTGAAGGTATTATGGAAAGAGAACCCCAAAGGTGTGTCTTTGGCCCAGGTTCGGAAATCCTGCTACTTCCTCCTTAAGCATCCCGACTTGCTGAGGGATTATCCATCCATGAAGCATCTCCTGAACTCCATGACTGATGTCGTCCAGCTCCAGGGAATCGGGGTGCAGACCTATGTTTGTCCAGCGCCTCCCCATCGCGCAAAAACATCCTCGGCACCAACACAACCTGcaaTTAGCATGACAGCTTCCACTGCTCGTCCCCCATCATGGCCCAGTACCCCACCTCCCAGCTTCCCACCAGCAAACACAGAATCCAACAAGACAATTGTGGAGGGGATAGACAAGCCAGGAGGCGTCCACTGGCAGCCCGTCCCCCTACTACCCCTTCCACCTCCACCTCTTCCAGACCAATCCGCAGCTTCCCTGGATCCCACTGAAAAGCTGTTGCCCAGAAAGAAAAGAGGACGCAGGAGGCGGAATAGGAAATCCCAAACTCCCCAGGGAGCGGAGCCGGCGGACCCTATTATTAGCTTTGGCATAGATTGGGCCAAGCTTCTGAGACCACCAGCTGGAAATCCTATTGTTCCGGTTCTGTTCCAAGATGGCACGGAAGGCACCAAAGTGGTTCTGGAAAAGCAGATGTCAGAGCCTCACTCCGGAGAGCCCCAAGGTGGCAGTTCGTGGAGATGCAGAGCTGCAGGTCCCCAAGCTTCTGACGTACGCCTTCCAAAGAAGCCCCACCAGGAACCCAACCCTTGTCCCCCTCTGGTTCACCCTCCCCCGCTGACGCAGCTCTCCCACCACTACGTGGAGGACACTGCGATGTACCTCCCCCACGAGCTGCTGTGGCCATCCCAAATGTACCCTGCCACTACGGACACCCAGTCTCAACTAGACGAACTCGATGACTTTCAGTTGGATCCACCGCTTTCCCCCCATCCAGCTCGCTTCCGACCCCAGCCACCTGGCAGATATCAACCCCAATAGCTGAGCAAAAAGCTTCATTCTTTTAGCCTGTTATACTGATAGctgggcagtagtgtggagtagtggttagggctctggactggaGGGTTGTGTGTTCAatccccaggtgggggcactgcttcAGAGCAAGGTACTTTATCTAGAGtgttccagtaaatgcccagctgtataaatgggaaacgtgtaaaaagaatgtgatatgtttaaacaagtgttagtcaccctggataagggtgtctgctaaaaaatcTAGTTATAACATTCATCCACTAAAAATCTGCTTCTCCTGCACTTCACTATACATGTCTCCCCTCGTCCTGATTCTATAGGTATCTGCAAACTTATTCCTCATTTCAAAACAAGTGCAGCAGCCATGGATTTAATTATTCTTGTATACAGACAAATCGGCAACATTCCCTTGTACACAAACATATGGGGACGTCAGATggacatattttatattttagtaaacCAAGTCTACTAAATCATTccaatgaatgtgtgtgtttgcattctCAAAGGGCTATTTTTATAGTATATTTCTATGGTAcatcaaagaaaacacaaagctttTCTGGATTTTTGGTGTTTAATTTTCACTATACAAGATTtcatgtttacatatatacttgAACTGAAGACATTTCATATTCCTGTCCAAAACCTATGCTTGACTGAATTAAATGATTTGGGATTTAGTTCTAGAATAAAACTGTTGCTTAGAGTAATcataaaataactatttgtaTATGACTAgggaatatatttaatatgttatatttttaatgagaatACTGAACTGAGggtatattttatgtttttgtgtcttaCAATTGTGTGACACATTATCCTGATTGTTGAAGTTCTGCAAAAATCACtgcctaatgttttttttatcaggaTTTATTTATCAGATATGTCGTTCAATGTTACACTTCAGAGCTGGGATGCAATGAGACCCAAAAGATTGTGTAGCTCTCCATGACActtattataaacaaacattgaagGGGAAAGCAAACACAGAAATTTACTTATTAAGATTCAAAAGAGATTGATTTGAATTAATGTTTCAGaactgtgtgtatattttgaatacattaattaaaaaaacattaaatcttCTGTGTTGGCATCTGGTACATTAATGTCAATGTATTTGTCAttaagtcattattattattattattattattattattattattatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012090 True 2642 mRNA 0.44 4 10587582 10591854

Neighbor

gene id symbol gene type direction distance location
AMCG00012093 atp1a2a,LOC107692876,LOC107749099,LOC107721700,LOC102222505,LOC100136182,LOC106569580 coding downstream 5129 10566210 ~ 10582453 (-)
AMCG00012085 NA coding downstream 150892 10367089 ~ 10436690 (-)
AMCG00012081 NA coding downstream 380820 10205472 ~ 10206762 (-)
AMCG00012080 NA coding downstream 494645 10080716 ~ 10092937 (-)
AMCG00012077 NA coding downstream 526113 10044620 ~ 10061469 (-)
AMCG00012091 NA coding upstream 1028 10592882 ~ 10596371 (-)
AMCG00012092 myp0,LOC106600490 coding upstream 42736 10634590 ~ 10650309 (-)
AMCG00012094 cadm3,LOC106600493,LOC106569583,LOC107749121 coding upstream 91514 10683368 ~ 10704672 (-)
AMCG00012095 slc5a2,LOC107672364 coding upstream 163191 10755045 ~ 10762452 (-)
AMCG00012100 si:dkey-16l2.16,LOC107729502,LOC107658507,LOC108427354,LOC107554119,LOC107730777 coding upstream 226241 10818095 ~ 10827147 (-)
G134402 NA non-coding downstream 239857 9852901 ~ 10347725 (-)
G134451 NA non-coding downstream 281555 10303569 ~ 10306027 (-)
G134443 NA non-coding downstream 300453 10225627 ~ 10287129 (-)
G134404 NA non-coding downstream 386357 10200802 ~ 10201225 (-)
G134405 NA non-coding downstream 641093 9936100 ~ 9946489 (-)
G134648 NA non-coding upstream 375422 10967276 ~ 10982791 (-)
G134819 NA non-coding upstream 804106 11395960 ~ 11400701 (-)
G134817 NA non-coding upstream 904821 11496675 ~ 11769509 (-)
G134840 NA non-coding upstream 968243 11560097 ~ 11795338 (-)
G134844 NA non-coding upstream 1011669 11603523 ~ 11604157 (-)
G134447 NA other downstream 331544 10255526 ~ 10256038 (-)
G134445 NA other downstream 336467 10250271 ~ 10251115 (-)
G134441 NA other downstream 357139 10212142 ~ 10230443 (-)
G134406 NA other downstream 364363 10176920 ~ 10223219 (-)
G134435 NA other downstream 432374 10154665 ~ 10155208 (-)
G134581 NA other upstream 137921 10729775 ~ 10811881 (-)
AMCG00012111 NA other upstream 343078 10934932 ~ 10961871 (-)
G134803 NA other upstream 738612 11330466 ~ 11386979 (-)
AMCG00012171 NA other upstream 1482150 12074004 ~ 12107414 (-)
AMCG00012170 NA other upstream 1517686 12109540 ~ 12122725 (-)

Expression


Co-expression Network