AMCG00012094 (cadm3,LOC106600493,LOC106569583,LOC107749121)


Basic Information

Item Value
gene id AMCG00012094
gene name cadm3,LOC106600493,LOC106569583,LOC107749121
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10683368 ~ 10704672 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012094
GATGACCCGTTCCAGCCGACCACCTCAGATGAGACCGTGGCGGCCGAAGGGACCGTAACGCTGACCTGCCGTGTGGCCGAGAGTGACAATTCCTCTTTGCAGTGGTCCAACACAGCCCAGCAGACGCTGTATTTCGGGGAGAAACGAGcCCTGAGGGATAACCGAATCCAGCTGGTGAGGTCCACTCCCACGGAGCTGTCCATTAGCATCTCTGACGTCAGTCTTTTGGATGAAGGGGAGTACACCTGCTCCATCTTCACCATGCCCGTCCGCACTGCCAAGGCCACTGTCACCGTCCTGGGAGTTCCTCAGAAGCCTCTGATTAAAGGCTACAGCGAACCCATCCAGGAGGGAGGTAGGCTCCACTTGACCTGCACCAGCTCTGGCAGCAAGCCCCCCGCCAAACTGCGCTggtacaaaggagaggaggaacTGAAAGGTCAGGACTTCACGGTGGAGGCAGACATAGGAGGCAAAACCTACACGGTCAGCAGCCGCACTGAGATGACTGTCAGCCAAGCGGACAACAACGTCATCATTTCCTACAAGCCCAGCGTCCGGATCCAGCCTGAGAATGACCTgccgagggagggagagaagttTCACCTGCAGTGCATCGGCTCCGGAAACCCAGAcCCCAACAATTACCAGTGGGAGAAGAAAGATGGGGAGCTGCCCCTGCTCTCTAAACAGGAAGACAGCTTCCTCCGTTTTGAGGCGCTCAACAAATCTGACAACGGCCTGTACCGGTGCGAGGCAGACAACGGTATCGGGAAAGGCATGGCTGAGTACAGACTCGTCGTTCAAGATCCCACTGCTATGTCCACAACCTCTGGGATTGACCACGCCGTGATCGGAGGTGTGGTCGCAGTCATTGTTTTTATCCTCCTGTGCCTGCTCATAGTATTAGGACGGTACCTCATTCGACACAAAGGAACGTACCTGACGCACGAAGCAAAAGGCTCGGACGACGCCCCAGATGCTGACACTGCCATCATTAATGCAGAGGGGGGGCAGTCAGGAGCAGAGGACAAGAAGGAATACTTTATC

Function

symbol description
cadm3 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in alar plate midbrain region; immature eye; nervous system; radial glial cell; and trigeminal placode. Orthologous to human CADM3 (cell adhesion molecule 3).

NR:

description
PREDICTED: cell adhesion molecule 3-like isoform X1

GO: NA

KEGG:

id description
K06780 CADM3, IGSF4B, NECL1, TSLL1; cell adhesion molecule 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012094 True 1050 mRNA 0.56 8 10683368 10704672

Neighbor

gene id symbol gene type direction distance location
AMCG00012092 myp0,LOC106600490 coding downstream 33059 10634590 ~ 10650309 (-)
AMCG00012091 NA coding downstream 86997 10592882 ~ 10596371 (-)
AMCG00012090 NA coding downstream 91514 10587582 ~ 10591854 (-)
AMCG00012093 atp1a2a,LOC107692876,LOC107749099,LOC107721700,LOC102222505,LOC100136182,LOC106569580 coding downstream 100915 10566210 ~ 10582453 (-)
AMCG00012085 NA coding downstream 246678 10367089 ~ 10436690 (-)
AMCG00012095 slc5a2,LOC107672364 coding upstream 50373 10755045 ~ 10762452 (-)
AMCG00012100 si:dkey-16l2.16,LOC107729502,LOC107658507,LOC108427354,LOC107554119,LOC107730777 coding upstream 113423 10818095 ~ 10827147 (-)
AMCG00012103 NA coding upstream 125845 10830517 ~ 10836605 (-)
AMCG00012101 LOC102204993 coding upstream 132644 10837316 ~ 10848475 (-)
AMCG00012102 NA coding upstream 147937 10852609 ~ 10858416 (-)
G134402 NA non-coding downstream 335643 9852901 ~ 10347725 (-)
G134451 NA non-coding downstream 377341 10303569 ~ 10306027 (-)
G134443 NA non-coding downstream 396239 10225627 ~ 10287129 (-)
G134404 NA non-coding downstream 482143 10200802 ~ 10201225 (-)
G134405 NA non-coding downstream 736879 9936100 ~ 9946489 (-)
G134648 NA non-coding upstream 262604 10967276 ~ 10982791 (-)
G134819 NA non-coding upstream 691288 11395960 ~ 11400701 (-)
G134817 NA non-coding upstream 792003 11496675 ~ 11769509 (-)
G134840 NA non-coding upstream 855425 11560097 ~ 11795338 (-)
G134844 NA non-coding upstream 898851 11603523 ~ 11604157 (-)
G134447 NA other downstream 427330 10255526 ~ 10256038 (-)
G134445 NA other downstream 432253 10250271 ~ 10251115 (-)
G134441 NA other downstream 452925 10212142 ~ 10230443 (-)
G134406 NA other downstream 460149 10176920 ~ 10223219 (-)
G134435 NA other downstream 528160 10154665 ~ 10155208 (-)
G134581 NA other upstream 25103 10729775 ~ 10811881 (-)
AMCG00012111 NA other upstream 230260 10934932 ~ 10961871 (-)
G134803 NA other upstream 625794 11330466 ~ 11386979 (-)
AMCG00012171 NA other upstream 1369332 12074004 ~ 12107414 (-)
AMCG00012170 NA other upstream 1404868 12109540 ~ 12122725 (-)

Expression


Co-expression Network