AMCG00012100 (si:dkey-16l2.16,LOC107729502,LOC107658507,LOC108427354,LOC107554119,LOC107730777)


Basic Information

Item Value
gene id AMCG00012100
gene name si:dkey-16l2.16,LOC107729502,LOC107658507,LOC108427354,LOC107554119,LOC107730777
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10818095 ~ 10827147 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012100
TGAGAGGGGAAGACAACGACACGACGGAGGAGGGGCCTGTGCCTGTCCGCGGCACAACCGGGattgaatgagagagagagaccgagagagaagtgaggaggaggagggagtgaCACTGGCCTAAGGCGGCGGCCGCGGACTCCTGCTCGTTGTCAGACCCCGTGCTTTCCTGAGACGCGTCCCCCGAGGTCGAGGCTCCTGCAGGGATCTGGAGCGAGAGAACTGAAAGAGGAAGGACAACAGGAACAGGAGACGGATATACACCCTTTCTAAaaagagagaacgagagagagtgtgagattATAATGCCGTGCATTTGATGGGACTTTACAGTACATTAGTGCTGGACTGAagctgagagagaaaaagaagaagaaaaggagagcaggaggaagaggaagaaggaaCAGTAGAGCACCGATTTGACAAACGAGTAAAAAGATGAGGGCAGAAAGACCTTAGATTGCTATGGTTGCCTGCGTCGGGGGTCACTGAACCCAAACGAGTGAGGAAGAGAGGGGCAAGCGTGGCGGAGGAGGAAGACGGCAGAGACACTCTCGttctctctggctctctctccctctctctcggtctccctcactcactcgtttgctctctttctctctactAAGACTCCCCACTTCCATGAGAGAGGGACGACAGGAAaaaagagggggggagagagacggaCGTCCAACACTTCCTCGTTTTCTCCCAGTAAATAGAtcagtttgaattaatttgtgtaGATGGAAAACTGAACTGGACCATTACACTGCTTTTGAATGTGAACCTGCTTGAAAAAGCTTGAACCCAGGATACCACTATTTCACACACGGATTGAAACAATTCTGGATtgctctgcctgcctgtctgtctcccttTTTTCCCTAATTTCTGGGAAAATCTTACGGATTTGCACTGAagaatagtgtgtgtgtgtgtgtgtgtgtaggagggGCAGGGGGACGACAGTGAATTGTATAGGTGGACCACGTAAAAACATAACCGGAATTCTTTGGGATAGCGATCTGTGGACTCGGCCCAGGAGAAAGGAGGGATCATTTTAtaatcagattatttatttgtgtgtgttctttcgtgtgttattttgtcttttaatttctcTTCCTGTTCccatgattttttaaatacttttttgttcttcataaattgtgctgttttggtccgtctgtgtttttttgtttattgttgtgtgGGCGGATCGTAATGGGAATGGCCGGGAAGGACTATCACCACCTGTTTAAGCTGCTCATCATCGGAGACTCCAATGTGGGAAAGAGCAGCTTGTTGTTGAGATTTGCAGATAACACTTTCTCAGGCAGCTACATCACTACGATCGGAGTGGATTTTAAGATCCGGACAGTGGAGATGGAGGGCGAGAGAGTGAAGCTGCAGATCTGGGACACAGCTGGACAGGAGAGGTTCAGGACCATCACCTCTACGTACTACAGGAACACCCATGGGGTCATCATCGTCTATGATGTCACCAACCCAGAGTCTTTCGTCAACGTCAAGCGCTGGCTCAACGAGATCGGCCAGAACTGTGACAACGTCTGCAAAATActggTGGGCAATAAGAACGACGACCCCTCCAGGAAGATGGTGGACTCCCAGGATGCTCAGCGGTTCAGCGAGTCGATGGGCGTCCGGCTGTTTGAGACGAGTGCCAAGGAGAACATCAACGTGGAGGAGGTGAGGAGTGCGGGGATGTTCTTGGCCTTCACACGCATGGTGCTGCGCGCCAAGAAAGCTTCGCAGGCCCGGCTGAACGAGCGGCAGGGAGAGCTGGTCAACATCAACACCAAGCCGCCCCGCAAGAGGAAGCAGAAGTGCTGCTGAGAGAGGAGGGCGGGGCAGGAGAGCTGGAGGGGGGGGTGACTGGATTTGACAGAGTTTATACAAATGAAGTGAGAGCGGAGGGCAGGGGATGAGGGTTAGACTACGAGTTTGTTAGCAATGCACTttggggagaggagaggactaGACTGTACCGTTCATTGAGCacggagggaggaggagagagggtgaGCAAGGGAGAGAGACTCAACTGGACCCTGCAGGATACacagactggacactacagtgtTAATACAGACCCGCCGACTGCACACTAACACTGCACTGGGTCCCGAGAGCGAGGATCCTGTACACACTGAACgcccacaaaaataaaaaaggggagaGGCCAATAAAGACTGACTTGACCGACTTCTCCAGTACATTTCAACCACACAGCGACTGACCAGGCGGCCGTAGTGGCAATGCTGTAGAGAGCGAATGAGAGGGGAAAACGGAGGGAGGGAATGTGAGAGATAGCCTGCGTTGTGAACAGTAGGGTtcagtcagtctctctctccccctttgcATTTTCACTGTAACTACTACTCTACTACATTGGAGTCTGCATCTACTATTCTTATACTTTATTTAATGATACTTTTAGTATGCACTATCGGATAAGAGTCCTGCATTTCTATCGCTTTGCTAAGATGAACCCCCTGCTAGAAACCCGatacaaggagagagagagagagagagagagagagagagtccgtCCCTCGGCAATAAGCACATAACAGGACGGGACTCTGAGATAAGAGGAGATGGGGGTAGATTGGGAGGCAGAGGGATGTAGCAAAATGACACGAGCTCAAGACTAAGTTGTATTGTATCATTTAACTGGAACGCTACTGTAATTACAGCAATAAGACAATTAATTAACAGCCATGCTGCTTTTGGGAGAGGTCTACTAACAATAAAATCTgctatgttgtttgtttgttttttccttatcGTGTCTTGTCCGTCCcatgtttaaacatgtttaactgTGAGGAATGTTTgcgatttttgtttttctttttttaaggaataaatcaaagaataaataataacttgtGAGTAGCTGTGGATTACTAACTTTtccatttctgattttattttatttttaaagctgtttctCTCCTGCATGGTTTATCTCTGCATGTTCTCACTTGCAGATTTTCTCTGACTCTGTGTCTGTATTTGGCTTagagtttgttttttccttttgtagtTATTGATGTATTAAATCTCCCTTGtctctttatttaaacaatgtggggaagcaataagaAAGGCAAatagaatgctagggtatattgtcaaaagtgtagagtttaaaacaagggcagtgatgttcagactgtactatGC

Function

symbol description
si:dkey-16l2.16 Predicted to enable GTP binding activity and GTPase activity.

NR:

description
PREDICTED: ras-related protein Rab-35-like

GO: NA

KEGG:

id description
K07876 RAB35, RAB1C; Ras-related protein Rab-35

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012100 True 3219 mRNA 0.47 7 10818095 10827147

Neighbor

gene id symbol gene type direction distance location
AMCG00012095 slc5a2,LOC107672364 coding downstream 55643 10755045 ~ 10762452 (-)
AMCG00012094 cadm3,LOC106600493,LOC106569583,LOC107749121 coding downstream 113423 10683368 ~ 10704672 (-)
AMCG00012092 myp0,LOC106600490 coding downstream 167786 10634590 ~ 10650309 (-)
AMCG00012091 NA coding downstream 221724 10592882 ~ 10596371 (-)
AMCG00012090 NA coding downstream 226241 10587582 ~ 10591854 (-)
AMCG00012103 NA coding upstream 3370 10830517 ~ 10836605 (-)
AMCG00012101 LOC102204993 coding upstream 10169 10837316 ~ 10848475 (-)
AMCG00012102 NA coding upstream 25462 10852609 ~ 10858416 (-)
AMCG00012104 NA coding upstream 47940 10875087 ~ 10879326 (-)
AMCG00012109 LOC106570812,LOC108270226 coding upstream 67201 10894348 ~ 10899593 (-)
G134402 NA non-coding downstream 470370 9852901 ~ 10347725 (-)
G134451 NA non-coding downstream 512068 10303569 ~ 10306027 (-)
G134443 NA non-coding downstream 530966 10225627 ~ 10287129 (-)
G134404 NA non-coding downstream 616870 10200802 ~ 10201225 (-)
G134405 NA non-coding downstream 871606 9936100 ~ 9946489 (-)
G134648 NA non-coding upstream 140129 10967276 ~ 10982791 (-)
G134819 NA non-coding upstream 568813 11395960 ~ 11400701 (-)
G134817 NA non-coding upstream 669528 11496675 ~ 11769509 (-)
G134840 NA non-coding upstream 732950 11560097 ~ 11795338 (-)
G134844 NA non-coding upstream 776376 11603523 ~ 11604157 (-)
G134581 NA other downstream 6214 10729775 ~ 10811881 (-)
G134447 NA other downstream 562057 10255526 ~ 10256038 (-)
G134445 NA other downstream 566980 10250271 ~ 10251115 (-)
G134441 NA other downstream 587652 10212142 ~ 10230443 (-)
G134406 NA other downstream 594876 10176920 ~ 10223219 (-)
AMCG00012111 NA other upstream 107785 10934932 ~ 10961871 (-)
G134803 NA other upstream 503319 11330466 ~ 11386979 (-)
AMCG00012171 NA other upstream 1246857 12074004 ~ 12107414 (-)
AMCG00012170 NA other upstream 1282393 12109540 ~ 12122725 (-)
AMCG00012174 NA other upstream 1362868 12190015 ~ 12213799 (-)

Expression


Co-expression Network