AMCG00012107


Basic Information

Item Value
gene id AMCG00012107
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10905052 ~ 10909045 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012107
GGAAAGAAAAAGGGCTCCCTCCGAGTGCGGGTGGGAACATCTTGGCGGGTTATTCGCAACAAGAACGAGCAGAAAAAACTGCGATTGGTGAAGAAGGTCATCCAACATCCAAAGTACACCGACACTTCTATGGACTTCGATGTGGCTCTGCTGCAGCTCTCTGTCCCCAAGAAAATGAAGCACATCAAGACCCTGCAGCTGTTGGCTACCCGGGAGACTGCTCCTGTTGGACAGAAATGTTGGGGTGACTCGGGGGGTCCCCTGGTGTGTGACCTCACTGGAAAGTGGGTGCAGGTTGGGATAGTCAGCTGGGCAGACGGCTGCGCAGAAAAGAACAAACCCACCGTATATGCCAATGTTGGCCACTACTTCAACTGGATCAAGGAGCAGATGTCTAAGCTggactga

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04612 Antigen processing and presentation
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012107 True 408 mRNA 0.53 2 10905052 10909045

Neighbor

gene id symbol gene type direction distance location
AMCG00012110 NA coding upstream 14805 10879944 ~ 10890247 (+)
AMCG00012105 NA coding upstream 85466 10816588 ~ 10819586 (+)
AMCG00012099 NA coding upstream 88724 10812697 ~ 10816328 (+)
AMCG00012098 NA coding upstream 100823 10803368 ~ 10804229 (+)
AMCG00012097 NA coding upstream 108577 10793886 ~ 10796475 (+)
AMCG00012106 NA coding downstream 4365 10913410 ~ 10917138 (+)
AMCG00012108 NA coding downstream 71633 10980678 ~ 10980866 (+)
AMCG00012123 NA coding downstream 277723 11186768 ~ 11195348 (+)
AMCG00012121 NA coding downstream 304563 11213608 ~ 11224284 (+)
AMCG00012122 NA coding downstream 338137 11247182 ~ 11248652 (+)
G134556 NA non-coding upstream 51761 10849858 ~ 10853291 (+)
G134498 NA non-coding upstream 306211 10598539 ~ 10598841 (+)
G134495 NA non-coding upstream 309646 10594849 ~ 10595406 (+)
G134378 NA non-coding upstream 634998 10269680 ~ 10270054 (+)
G134339 NA non-coding upstream 704082 10199151 ~ 10200970 (+)
G134615 NA non-coding downstream 58231 10967276 ~ 10982794 (+)
G134692 NA non-coding downstream 324636 11233681 ~ 11233883 (+)
G134698 NA non-coding downstream 391289 11300334 ~ 11302065 (+)
G134749 NA non-coding downstream 594915 11503960 ~ 11504648 (+)
G134766 NA non-coding downstream 802205 11711250 ~ 11766411 (+)
AMCG00012088 NA other upstream 220955 10629684 ~ 10684097 (+)
G134343 NA other upstream 587234 10303273 ~ 10317818 (+)
G134373 NA other upstream 597213 10252810 ~ 10307839 (+)
G134337 NA other upstream 645828 10223004 ~ 10259224 (+)
G134366 NA other upstream 764595 10139954 ~ 10140457 (+)
G134613 NA other downstream 17561 10926606 ~ 10935107 (+)
AMCG00012112 NA other downstream 140020 11049065 ~ 11061030 (+)
G134697 fus,LOC103040960,LOC107658502 other downstream 333184 11242229 ~ 11293899 (+)
G134743 NA other downstream 527334 11436379 ~ 11446163 (+)
AMCG00012152 NA other downstream 710132 11619177 ~ 11870630 (+)

Expression


Co-expression Network