AMCG00012109 (LOC106570812,LOC108270226)


Basic Information

Item Value
gene id AMCG00012109
gene name LOC106570812,LOC108270226
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10894348 ~ 10899593 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012109
ATGGAAAGTGAAAACTCTTTACACAATTCAGACATTATCTCCAGCGATGAGGATAAATTTAAAGTTCAAAATCTAAAGGAACTGCTGTGCAAGCTGGGACTCAGTCATCTCTACCCCAACAAACTGACCCTGAAGGCAATTCTGAAGCTCAGCACTGAGAGTGTCACTTACACAGAGCCTCAGTCCCTGAAAGACGTACCCTGGAGCTTTCTGAAAAGGCTGATGATGGTCAATGTCAAAGCCAGAAACACCAAGTCAAACCAGGACAAGAAGGCCATTGCAGAGCTGGACCTGCAGCTTCTGGACAGCTCCCTGGAAATCGAGCACTTCCTAAGAGAGATGGGCCAGATCTATGAGGCTTCCCTCTGTGGCTCAGGCAGCAGGTCCCAGCAAGTCCGTCGGCTGCCCAGTCTGGCTGCAGACCTGCTGCTAGATGGATTCCCCCTGGAGATGGTGGATGGAGATGCCTCTAACATCCCAGTAAGGATGAAGGAGGTGGGGAAGAGGCCCAAGTGCCAGTTTGTGCACCAGAACGTAGCCGGGGTGTCAGCACACAACAAGAACATGACGGACAGGAAGCATCTCCTGGAGCAGCTGAACGAGATGACACAGATAGCCGCTGCCATGGAGAAGCAACCTGCAGTCAGGAAATTCACTGATGTGTTGGACTATGATGCTGACACCAATAACTGGTACATCCCAGGGCTGTGGCACGGGACACCTCCAATGGCGCCCGTCAACACAGGCTACAGCGAGTCGGTTTTAAAAATTGATGCACATTCTGAATTAGAGACCGGGGAAATGCACATGATGCAACAGCTGAAGGACTACTACAAGAGCAAGGACCGGCATGTCTCCCTGGTGGAAAAATACAAGGCCGACTTTGTCAACAGTATCAAGGTTCTCCGCCGAGAAATAGAAAACTCAGTGAACAGCAGGCTGGAGAGCACTGCAGAAATTGTCAAAGGCATGACAAAGGTGAAGGACATTCAGCGCAAGCACAGGGCCATGATAGAAAGGAGGGTGATAAGCTTGCTGCAGACCTGCAAGAATAGCAACAGCCCCCTGAGTGACCAGCAGCTAGAGCAAGAGTTTGAGATGGTGTGGAAGGAGACTGTGTCTGAGCTGAACTTCCGGGGACTGGAGAAAAGGGATATTGCCTCCTGTGTTTTGGATAAGTTGAGGAATAATTTGAAAAGGCACGGGAGTTCGGTCAATGAGATGTTGAGCTCTGTGAAGGACTTGACCAAACACGGTGAGACTCCTTTCACTGTCACCAATAAACACTTCAGCTTGAGGAAGCAGGTGAAGAACTTCTTCACAGGGAAAGACCGTGAAGCACAGGCCCAGGCTCTAGCCGATGACATAATCGAAAACTGCACCAAGATTGTCATGGACAAGGCCAAAACCAACATGGATTACCATGACATCTCGCAGGCCTTCGTCCAGTTTACCATTCTGAAGGACTTGCTGAATAAGGATGACTACCAGAGCTACCAGCAGTACATCCTGAAGTATCACAGTTTCGTCAAGAGGTGGCTATTCGAGCGCATCTCCAGCCACAAGTCCATAAAGAGCATCATCGCCAAGATGAAGCTAAGGCGGCTGCAGACCATTGTTGAGAGGATCGTGGCAGCCATCCAGGTGGTGCGGATGGAAAGGAGGGGCAGCAGCACCAGGGAGTTCCTGGAAGATGTGTGCATGGCACTCAAAGAAGACCTGGTGATTGACAGGGAGGAGGGTTTGCAAGTGCCAGTAAAGCCTGAGCTCTTTGCCGAAAGCCTTCTGGAATCCGTGAACCACATGCGCAGAAACCTGATGGACAAATTTTCTCAGCCGAGGGATGTCATGAGGACGCTGAAAAGCCTTCCCTTCAATCCCCAGGATGAGCTGTTCAAGAAGGTGTTTGGCTGTGGGCAGCTGTGTCCCTTCTGCGGGGTGCCCTGCGAGGCCCCAGGCCGGGAACACCAACAGCACCATGCCACCACCCATCGCCCCCGCGGACTCTGCAGTTACTTCTATGCCTCCAATGCTTAG

Function

NR:

description
PREDICTED: up-regulator of cell proliferation-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012109 True 2037 mRNA 0.51 7 10894348 10899593

Neighbor

gene id symbol gene type direction distance location
AMCG00012104 NA coding downstream 15022 10875087 ~ 10879326 (-)
AMCG00012102 NA coding downstream 35932 10852609 ~ 10858416 (-)
AMCG00012101 LOC102204993 coding downstream 45873 10837316 ~ 10848475 (-)
AMCG00012103 NA coding downstream 57743 10830517 ~ 10836605 (-)
AMCG00012100 si:dkey-16l2.16,LOC107729502,LOC107658507,LOC108427354,LOC107554119,LOC107730777 coding downstream 67201 10818095 ~ 10827147 (-)
AMCG00012114 NA coding upstream 87649 10987242 ~ 10988426 (-)
AMCG00012113 NA coding upstream 91024 10990617 ~ 10994160 (-)
AMCG00012116 NA coding upstream 104117 11003710 ~ 11016852 (-)
AMCG00012115 NA coding upstream 130567 11030160 ~ 11039337 (-)
AMCG00012117 NA coding upstream 189683 11089276 ~ 11103610 (-)
G134402 NA non-coding downstream 546623 9852901 ~ 10347725 (-)
G134451 NA non-coding downstream 588321 10303569 ~ 10306027 (-)
G134443 NA non-coding downstream 607219 10225627 ~ 10287129 (-)
G134404 NA non-coding downstream 693123 10200802 ~ 10201225 (-)
G134405 NA non-coding downstream 947859 9936100 ~ 9946489 (-)
G134648 NA non-coding upstream 67683 10967276 ~ 10982791 (-)
G134819 NA non-coding upstream 496367 11395960 ~ 11400701 (-)
G134817 NA non-coding upstream 597082 11496675 ~ 11769509 (-)
G134840 NA non-coding upstream 660504 11560097 ~ 11795338 (-)
G134844 NA non-coding upstream 703930 11603523 ~ 11604157 (-)
G134581 NA other downstream 82467 10729775 ~ 10811881 (-)
G134447 NA other downstream 638310 10255526 ~ 10256038 (-)
G134445 NA other downstream 643233 10250271 ~ 10251115 (-)
G134441 NA other downstream 663905 10212142 ~ 10230443 (-)
G134406 NA other downstream 671129 10176920 ~ 10223219 (-)
AMCG00012111 NA other upstream 35339 10934932 ~ 10961871 (-)
G134803 NA other upstream 430873 11330466 ~ 11386979 (-)
AMCG00012171 NA other upstream 1174411 12074004 ~ 12107414 (-)
AMCG00012170 NA other upstream 1209947 12109540 ~ 12122725 (-)
AMCG00012174 NA other upstream 1290422 12190015 ~ 12213799 (-)

Expression


Co-expression Network