AMCG00012110


Basic Information

Item Value
gene id AMCG00012110
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10879944 ~ 10890247 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012110
ATGTCGTCTCCCACAGACGAACTGGTCCACAGTCTTTATCAGCAGGAAGTGTGGCGGAAAGTGAGAAATGGGatgatgAGAAGTACAGTGCTAGCTCTCTTCTTCTCCCTGTCCCACTTCTACACTCTCttcccgctccctctctcctggcAACATGAGGTCCTGGGAACCCCTGGCACAACGAGGGCCCCCCCAGATCGCATCGCCACCACCGGTGATGGTAACAACAGCCCCGACACAACTATTGCAGTTCATGGTGATGGTGGCCCAGCCAAGACTGCTGGCGAAGATAGCATCCTTAACAACACAACAGCTGGCCAAGTCCACAACCTCAAccgcaacaacaacaacaacaacatggaaAAGGACAGTAATGATACACTGAACTCAAGCCCCAGTGGGCTCAACACAACCAGTGACGGCAGTGTCTCCTCCAGCTCTAGCGTACCCAGTTCCCTCCCGGACTTTCCCAATGGACTCAATGAACCCAGTGACCACAACAGTACCAGTATCTTCAGTGACTCCAGCACTCCCAGTTCCCCCCCAACCTTTCCTAATGGGCTCCAAGGCACAAGTGATGTCAGCAATACCATTAGCTCTACTGGCACCAGTTCTCCCCCAGTCTTTCCCAGTGGACTCAACGAAAGCAGGGACAACAACAATTCCAGCATCTCCATTTTCTCTCGTGCTACCAGTCCCCCTCTTGCCTTCCCTAGTGTACCCAACGAATCCAGTGACTACAGCACCACCAGTAACACCTATAGCTATAATGGTATCAGTTCTACTCCAGTCTCTCCTATGGAACCAAGCACCACCAGTGACTACAGCAATGGCAGGTTCTCTTCAAACTCCATCTCTACCAGTTCTCCACCAGAGTCTCCCACTGGACCCGGTGCCACCAGTGACTACAGGAATGGCAGGCTCTCTGGAAAATCCACATCTACCAGTTCTCCACCATTCTCTCCCACTGGACCCAGCAAAACCAGTGACGCGAGGCATGCTATTAACTCCACTACTACCAATTCCCCTCCAGTCCCTCCCAATGGACCCAACACCACTGGTGACTACAACACCACTGGGATCTTCAATGTGGAATGGGGCTCCACCTCTGACAATGGGGGTCCGGGGCCACGTGGTATCCACCTCACCTGTCTGGTCACCTTGTGGGCCCTATCAGTGACCGCCACTGTCTTTTTCGGCCTGACCGTGTTCCTGGCCATCCGCCTGTCTCAGCAGAGGCGCCTGGCGAGGTGGAGGTCAGCGAGGAAGACgcagggggaggtggggGGTACCCTCACCCCAGACACCAGCACAATGTCAACCTCCACCAACTCCTCTGAAAGTCCCTACATCAGCCCTATGAACACCACACCACAGACAACCAAGCTCACCCTTGCCCAACCTGAAACCTCCACCATGTCCTCGACCAACTTGGAAACAACATCAATCTCCCTTAAACCGGCTGCAATCCCTTTAGAGATCACCCAGATGCCTTCCTTTCCCTCCTCATCCAGCCCCCAGCGCACCACTACCCTATCCACCACACAGACCACAGCTGCCACCCAGCCCCCGAGCAGCCTGGTCACTGAACTCAAAACTAGCACCCCAGCTTCTTCTTCTACTGCCTCCCTCTCCACAATACAAGCCATTCCAGAGACCACCGCTCTGCCCACTTCTGCTTCCACTCAGCCGCCCGTCACCACGCTGGCCTCCACCACACTGGCCTCCAGTACGCTGGCCTCCACCTCAATGGACTCCCAGGCGACCCTGCAGTTAACCACCtctgccaacaaaacaaacacaccttcGCAGTCcgcagagagaaacaaacacgtGCTCTGGATGGTTATTATTATGGTTTTGGTGACGGCAGCCATAGTGGCACTGTGCGTCGGCATAGGTGCAGTTATCAACTCCCGCAGGAAGAGCCGCTCTGAGAACCTACACAGTGCGCCCGTCAAGGGAAGGCGAGGAAAGGGAGGGGAGGACGCTTGGGCCGGGCCCGTGGCTCTGACTGAGGAAAATGGGGCAGCCGTGGAGGAAGGCAAGGCCGGGGCCAAGGATGGGGGGATGGAGGAGGGCGAGAAAGCGCACGCTCTGAGCACGTTCAAGAGGAAGTCCCGTCCCATCTCCAGCCTGGCGCTGGAAGTGGAGACCGTGGAGATGAAGGAGAATAAGCCGGTGGTAGGGGAAGGCGAGACGGAGAAAGAGGGAGTGAAGGGAGAGAAAGCGGAGACCCAGCCCCTCCTTGCCCCGCCTGCCCCCTCTACCCAGGGGAATGGTCAGCTGCCCCCCCCTGTCCCCGATGACTCCCTGCCGCCCCCCTGCCCTGAAAACGATCCTtcatctctccctcctcctcttgaCTCAGGGGATGCCTTCTGTCTCACCTCTGCTGTATAA

Function

GO: NA

KEGG:

id description
ko04640 Hematopoietic cell lineage
ko04660 T cell receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012110 True 2403 mRNA 0.56 3 10879944 10890247

Neighbor

gene id symbol gene type direction distance location
AMCG00012105 NA coding upstream 60358 10816588 ~ 10819586 (+)
AMCG00012099 NA coding upstream 63616 10812697 ~ 10816328 (+)
AMCG00012098 NA coding upstream 75715 10803368 ~ 10804229 (+)
AMCG00012097 NA coding upstream 83469 10793886 ~ 10796475 (+)
AMCG00012096 NA coding upstream 102862 10768044 ~ 10777082 (+)
AMCG00012107 NA coding downstream 14805 10905052 ~ 10909045 (+)
AMCG00012106 NA coding downstream 23163 10913410 ~ 10917138 (+)
AMCG00012108 NA coding downstream 90431 10980678 ~ 10980866 (+)
AMCG00012123 NA coding downstream 296521 11186768 ~ 11195348 (+)
AMCG00012121 NA coding downstream 323361 11213608 ~ 11224284 (+)
G134556 NA non-coding upstream 26653 10849858 ~ 10853291 (+)
G134498 NA non-coding upstream 281103 10598539 ~ 10598841 (+)
G134495 NA non-coding upstream 284538 10594849 ~ 10595406 (+)
G134378 NA non-coding upstream 609890 10269680 ~ 10270054 (+)
G134369 NA non-coding upstream 635215 10194394 ~ 10244729 (+)
G134615 NA non-coding downstream 77029 10967276 ~ 10982794 (+)
G134692 NA non-coding downstream 343434 11233681 ~ 11233883 (+)
G134698 NA non-coding downstream 410087 11300334 ~ 11302065 (+)
G134749 NA non-coding downstream 613713 11503960 ~ 11504648 (+)
G134766 NA non-coding downstream 821003 11711250 ~ 11766411 (+)
AMCG00012088 NA other upstream 195847 10629684 ~ 10684097 (+)
G134343 NA other upstream 562126 10303273 ~ 10317818 (+)
G134373 NA other upstream 572105 10252810 ~ 10307839 (+)
G134337 NA other upstream 620720 10223004 ~ 10259224 (+)
G134366 NA other upstream 739487 10139954 ~ 10140457 (+)
G134613 NA other downstream 36359 10926606 ~ 10935107 (+)
AMCG00012112 NA other downstream 158818 11049065 ~ 11061030 (+)
G134697 fus,LOC103040960,LOC107658502 other downstream 351982 11242229 ~ 11293899 (+)
G134743 NA other downstream 546132 11436379 ~ 11446163 (+)
AMCG00012152 NA other downstream 728930 11619177 ~ 11870630 (+)

Expression


Co-expression Network