AMCG00012154


Basic Information

Item Value
gene id AMCG00012154
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11776441 ~ 11789617 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012154
ATGCATATCGGTTTCTCAGGCTTGTCCAATAACAGTGGTGTGTCCAGCCATCCACATCTTCGTCCTCATCCTCGTCCACATCTTCGTCCTCACCCCAGGAGCTCCATAGTGGGGGGTGAGGATGCTAAGGAGGGACAGTGGCTCTGGCAGGTGTATCTGAAAATTACTCTGAAGAACGGATATATCAGTTGTGGCGGCTCCCTGATCAGTGACCACTGGGTTCTCACTGCAGCACACTGTGTGGACTTCCATTATAAATGGTGGGAATCTGAGGTGGTCCTTGGGGCGCATTCCCTGGATGAACCCAGTGAGCATGAAGTGAGACGCACCATGAATAAGGTCATCAAGCATGAGGAATATGTGGGCGGCAAAACAGGCTTCGACATCGCGCTGATAGAGCTCAATGCCACAGTGTCCAGcaacaattacattaaaccCGTGACCCTGCCTGGGCCTGAAGACAAATACACCAAGGCCTGGGAGTGCTGGGCTACAGGCTGGGGGAATATCATGGAGGGTGGTAGGAAGACTGGGCAGCCCTGGGTCCTGGCCGGGGTCACCCGATTCGGGGATGGCTGTGGTAAAGAAGACTCTCCAGGGGTCTACACCCAGGTGTCCAGCTATCGAAACTGGATCAAGAAGCACAGTGGTGTCTGA

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012154 True 657 mRNA 0.54 4 11776441 11789617

Neighbor

gene id symbol gene type direction distance location
AMCG00012149 NA coding downstream 119309 11656076 ~ 11657132 (-)
AMCG00012141 NA coding downstream 236351 11536026 ~ 11540090 (-)
AMCG00012139 NA coding downstream 387707 11382279 ~ 11388734 (-)
AMCG00012132 NA coding downstream 425504 11347488 ~ 11350937 (-)
AMCG00012129 kat8,LOC102799453 coding downstream 445160 11322207 ~ 11331281 (-)
AMCG00012157 NA coding upstream 18382 11807999 ~ 11813611 (-)
AMCG00012156 NA coding upstream 53451 11843068 ~ 11866778 (-)
AMCG00012158 NA coding upstream 81620 11871237 ~ 11885827 (-)
AMCG00012160 NA coding upstream 100734 11890351 ~ 11896617 (-)
AMCG00012164 NA coding upstream 134704 11924321 ~ 11964818 (-)
G134817 NA non-coding downstream 6932 11496675 ~ 11769509 (-)
G134855 NA non-coding downstream 8487 11744894 ~ 11767954 (-)
G134853 NA non-coding downstream 10025 11766072 ~ 11766416 (-)
G134849 NA non-coding downstream 116136 11659721 ~ 11660305 (-)
G134844 NA non-coding downstream 172284 11603523 ~ 11604157 (-)
G134899 NA non-coding upstream 224735 12014352 ~ 12017558 (-)
G134936 NA non-coding upstream 328723 12118340 ~ 12118592 (-)
G135002 NA non-coding upstream 476986 12266603 ~ 12266826 (-)
G135008 NA non-coding upstream 572918 12362535 ~ 12362840 (-)
G135148 NA non-coding upstream 777056 12566673 ~ 12589807 (-)
G134803 NA other downstream 389462 11330466 ~ 11386979 (-)
AMCG00012111 NA other downstream 814570 10934932 ~ 10961871 (-)
G134581 NA other downstream 964560 10729775 ~ 10811881 (-)
G134447 NA other downstream 1520403 10255526 ~ 10256038 (-)
G134445 NA other downstream 1525326 10250271 ~ 10251115 (-)
AMCG00012171 NA other upstream 284387 12074004 ~ 12107414 (-)
AMCG00012170 NA other upstream 319923 12109540 ~ 12122725 (-)
AMCG00012174 NA other upstream 400398 12190015 ~ 12213799 (-)
G134981 NA other upstream 431588 12221205 ~ 12223185 (-)
G135146 NA other upstream 778634 12568251 ~ 13426065 (-)

Expression


Co-expression Network