AMCG00012164


Basic Information

Item Value
gene id AMCG00012164
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11924321 ~ 11964818 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012164
gcaggagcagcagcaggaggaggagtggCTGCCAAGTCAGACTAAGAGGGACAAATCAAGCAGGAAATCACATGACTTGAGTGCTTCCTCTTGCTCTCTCAATctcacaaagacacacaggttgctggaagagagggagagggagagagagagagagagagagagagatgtctcCACTATGGACTAGACTGCTCTTTGTAGGCTTCATCCAAGCGTCCTGGCAGTTTAACATTGATGTGACCAGACCACACATCATTAACGGCAGCCAAGGGGACTACTTCGGATACAAGACATTGCAATTTGCTACGAATAAGGAAAATTGgATAGTTGTCAGTGCTCCTTTAAAAGACAATGGGACAGGAGGGATCTACAAGTGTGCTTATGATGACAGCAAGTGTAATCCCATCAGCATAAAAGTGGTGGACAGTGGTGTGAAAGCCATTGGACTGTCTCTTGCTGCCAAGTCAGGACAGGAACCGGAGATAACGACCTGCAGCCCAGCCATGGCCCATGAGTGTGACAAGAACACTTACTACAACAGCATTTGCTATCAGTTTGACAACATGATGATGCTCACCTACAACTTCACACCTGCCTACCAAGAGGCCTGGGGGTTACAGAACAAGGAATTCATCTGGAACATCATGAGGAGCCTCATCAACTCCTCCATCCAATTTGCAGCTGTGCAGTTTTCTACAGAGCCCAGAATCGAGTTCACCTTTAATGACTACCAGAAGAGCAAAGACCGTTCCAAACTGCTCGAGAAATCAGTCTACATGAAGTTACTCACAAATACCTACAATGCACTGAATTTTACTGTAGACAGGCTActgtataatacattattggGAGCCAAAGCAGATGCCACTAAAGCGATCCTGATCATTACTGACGGAGACCCCACGGACTTCGATGACTACGAAATATCCAAACACCTTGAAAAGAATAATGTCATCCGCTATGTGATTGGGGTTGgaaaagttaatttagaaagaATAAGGATTCTTGCCTCAGAGCCTAGAGAGAACAATACCTTTAAAATCCAGGACTATGCTGGGCTGAAGGGTGTCCTGGACAACTTGCAGAACAAGATCTACAACATAGAAGGGAGCCAATGGGACACATTAATGCTGGGAGCAGTGGGTTCTAACTCGTGGCGTGGTGCCATCAACGAGATCGGCCCTTTGGACTCCGAGGACCAGATCTCTATCTCAGACATCCCTTTGGACTCCTACCTGGGTTACTCGGTGGCTCATGGCCGAAGAGGGGAGATCTCTCTGCTCATGGCAGGGGCCCCCAGATCCAGTCACAAAGGCATAGTGGTGATCTTCCAGAGGACAAAACAGACAATATGGAACGCCACCCAGTTATTAAATGGGACTCAGATCGGTTCATATTTTGGAAGCGAGCTGTGCGCCCTGGATTTGGACTCCGATGGCAACACTGACTTTCTCTTAGTGGGGGCTCCAATGCACCACGGGTTGAAGAGTGAGGGGATGGTGGTTGTGTACAGCCTGACTCAAGAGgtgatGTTTGTGGAAGGTATGAATGTCAGTGGGGAATACGGTTCGGACCGTTTCGGTTCTGCGCTGGCTGCGCTGCAGGACATCAACGGGGATGGACTGACTGACGTGGCTGTAGGAGCGCCCCTGGAAAATGGCCACCAAGGGGCAGTGTACATCTATCTGGGCAACAAGCAGACTGGAATCAACATAAAATTCAGCCAGCATATCCCTGCCAAGACCCTGTCCTCTGGGCTGCAGCACTTTGGTCAGTCCATTGATGGGATGATGGACATGAGCAAAGATGGGCTGACAGACATCACTGTGGGAGCGCTCGGGACAGTAGTGACACTCAGGTCCAGGCCAGTCCTCAGTGTGACTGCTAAGCTCTCCTTCACTCCCAATGAAATTCCCATCAGTAATTTCCACTGTTTGGACCAAGAGACCACCAAACAAATGATAACCCTCACTGTGTGCTTTGATGTAAGTCTGGCTACCATCAGGAAGGGAGAAGCCCCTGGGCTAAATCTGTCCTACCAGCTGGGCCTGGACAGTGTGAGACAGAACAGTCGGGCTTTCTTTGATGCATCTGCTGAGCAAAAGCTGTTCCAGAACAATACCTGGCTGCCACTGAACAAGACATGCTACAATAACTCAATCTACATGAAAAACTGTGTGGAAGACACCAGATCCCCCATTAAGATCACACTGAAGTTCTCTCAGCAGGAGACCCATGACTCTGCAGATCTCACCCCCATCCTCAACATCGCGAGCGAGCATCTGGTGTACACAGAGGTCCCTTTCCAAAAAAACTGCGGGGGAAAAGATGATTGCACCGCTGAACTGAAGTTGGAAGTAACATTGGAGACCCACACCCTATTTGTGGTAAACCAGGGCCTTTTCAATCTCACAATCAAATTGTTGAACAAGGGTGACGACTCCTACAACACCACGCTGCAGCTGGTTCACCCTGTGGGACTTTCCTTCTCCAAGTTAGAGACAATCCAGGCGTCCCGGCGCACCATTCCCAGGTGCATGGGCCAACAATCAGAGAATCAAACTCTCTGCCGCATCAGCATTCCGGTCTACCCTGGCAAGACAAATGCAACCTTTTTCAGTATGTTCAGAGTCTCTGTTGAGTATGACTGGAACAACGTTGTGGAAATGCACTTCATAGCACACAGCGACAACGGAAATGACACCCTAGTTAGTAAGAGCCTGCCGGTGCAGTTTGCCATAGACCTCACAATCAGAGAGCTGGAGTCCAACACCTACGTCAACTTCTCCCTGGAAGAGAGCAGCCCTAAGGTCGTCTGGCACTCTTACGAGGTAAAGAACCTGGGACTGATAGATGTGCCGGTCAATGTCACCTTTATTGTGCCGACTCAATGTGAAAACAACTTCGAGTGGACCACCAGAGAGATAGAATTCAACAAGGATGCGCCCACTCGGTGTTACAAAGCAACAGACATGACTGAAAACAGCTGCTCCGATAAGAAGTGTAAGAAGTGTAAGAAGATCTTGTGCTCAATCTCCAAGCTGAAGAAGGGCTCCTCCGTCCAGTACAACATCTCCGGCGAGGCCCACTTTCACATCCAGCCTGGCCAGGGGAAATACTCTTTCTCCGAGAAGATGGAACAGGTGAATTTCTTCAGTTCTGCCCATCTAAGCTACGACAACCAGCGCTACATCCAGTACAGTGCCAGCTCCCTGCTGGGCTTCTTCAAGAGAAAGAAACCAGACTTCCAGACGAACAACGCAGAGCTGGACAAATCTCCCGTTGATGCAGAGAACGAGCTGCATTCAAACCCAGGAGAGGATGGGGCCCTTATCTCGGACAACCCCAAAGACAACAACATGAAAGAAAGGATAGAGAACGGAAGCAGCCCAGAAAAGGAGGAGACCTCCGAGGCTTAAACTTGAGACCTGGTGTTTTTGAAGCCCTTGTTTCCAAACCGAAATTTTGAGGAATTCCTAACGAAGAATGCATGTCTTCTGGAACTCAAAAAGCACAGCCTGGCCAGGTCCCCGAAAGAATCTCATCAAGCAATAATTCAACGGAACGAGAAAGGAGACATTCTAGTTTCTAGCACTTTATCAGGCCTTTCCAACGAtgataaaaaacatatattttcttacagtttattttcaaatttgtataTCATTTTAGACTATTGCTGTTTTATATTCCTCTACCAGCTGGCTACTGGTGCCCCTGCTTCCAACAGTGATGCCTGCTCCATGAATTCCCCACTGCAGTGCTATACAATACTCTGGAATTACATGAATGATGCTCTCAGGTAAATTAACTAaaccaataattacattaaaaacctACTTAATTAGTTTCAAGTTCCTATTTAAATTTGCAGCTTCATATCTGCCTCATTTAAAattccaaatataaacaaaattcaGCAAATCGTGTCAATCGCTTATCGTAAGCTCAGGTGGACCGGAAGCTGAAAAACACTGGGATCCCGATAACCGATAACGGATAACGGATAACCATGTCAGGGTACGGCTGGCatataagtatatgtatatagccCTTCATTATGAGGCTCTTGCCTAAAGCATGAACCCAGTACATGTGAGAAGGCTTCCTTTTCAGTGTCTGTTAATATGCATCTGTATGTGA

Function

GO: NA

KEGG:

id description
K06461 ITGAM, CD11b; integrin alpha M

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012164 True 4143 mRNA 0.47 30 11924321 11964818

Neighbor

gene id symbol gene type direction distance location
AMCG00012160 NA coding downstream 27704 11890351 ~ 11896617 (-)
AMCG00012158 NA coding downstream 38494 11871237 ~ 11885827 (-)
AMCG00012156 NA coding downstream 57543 11843068 ~ 11866778 (-)
AMCG00012157 NA coding downstream 110710 11807999 ~ 11813611 (-)
AMCG00012154 NA coding downstream 134704 11776441 ~ 11789617 (-)
AMCG00012163 dctpp1,LOC102793672 coding upstream 65250 12030068 ~ 12032137 (-)
AMCG00012165 NA coding upstream 73407 12038225 ~ 12042088 (-)
AMCG00012166 stx4,LOC106945442 coding upstream 77814 12042632 ~ 12051211 (-)
AMCG00012169 NA coding upstream 177692 12142510 ~ 12146911 (-)
AMCG00012175 LOC106579300,LOC106521980 coding upstream 188351 12153169 ~ 12179736 (-)
G134840 NA non-coding downstream 128983 11560097 ~ 11795338 (-)
G134817 NA non-coding downstream 154812 11496675 ~ 11769509 (-)
G134855 NA non-coding downstream 156367 11744894 ~ 11767954 (-)
G134853 NA non-coding downstream 157905 11766072 ~ 11766416 (-)
G134849 NA non-coding downstream 264016 11659721 ~ 11660305 (-)
G134899 NA non-coding upstream 49534 12014352 ~ 12017558 (-)
G134936 NA non-coding upstream 153522 12118340 ~ 12118592 (-)
G135002 NA non-coding upstream 301785 12266603 ~ 12266826 (-)
G135008 NA non-coding upstream 397717 12362535 ~ 12362840 (-)
G135148 NA non-coding upstream 601855 12566673 ~ 12589807 (-)
G134803 NA other downstream 537342 11330466 ~ 11386979 (-)
AMCG00012111 NA other downstream 962450 10934932 ~ 10961871 (-)
G134581 NA other downstream 1112440 10729775 ~ 10811881 (-)
G134447 NA other downstream 1668283 10255526 ~ 10256038 (-)
G134445 NA other downstream 1673206 10250271 ~ 10251115 (-)
AMCG00012171 NA other upstream 109186 12074004 ~ 12107414 (-)
AMCG00012170 NA other upstream 144722 12109540 ~ 12122725 (-)
AMCG00012174 NA other upstream 225197 12190015 ~ 12213799 (-)
G134981 NA other upstream 256387 12221205 ~ 12223185 (-)
G135146 NA other upstream 603433 12568251 ~ 13426065 (-)

Expression


Co-expression Network