AMCG00012169


Basic Information

Item Value
gene id AMCG00012169
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12142510 ~ 12146911 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012169
ATGCGCGCCGGGCACAGTGCGGGCAGCGGGGTGCGGGGCAGGGGGCCGGCGGAGGCGGATCGGCAGGACACCATCAAGAATTCCCAAAGACTGACCTGTTTGCTGCTGAGCCGATGCAAGGACTTGCTGGAGGAATACTGCTTCAGGCAGGGCTTCGAATTCGAGAATGTGAACCCCCGTCCCCTGACCTGCCCTGAGCCGGCGGCAGAGCAGCGGCCCAAGTGCCCGTCGGAGAGGTTGCAAGAGACGGCTGCCGCCCTCCGCACCCTGGTCAGGCGGCTGCAGGAGGTGAAGCGCTGGCAGACGGACCTCAACCCGGATGCCCACAAACTCCACGAGCTCCTGGAGGACGTCATCTACAAGCTTGGCGACCTTTGTGCCAACCTGGAAATGGTGCGGAGCTCCGCGAAACTGCACCAGTACCCCTGTGCCCAGGAGACCCCGCCCCACACGGTCTTTGATCGCAAAATGGTCGGTCTGAGCGTGTGCCAGGGCTGCCTGGACTGGCTGCAGGTCGCCAAGACTGACCTGGACGACTGGAGCTGTGTGAATGTATGAACAGGACTGTGCGGGAGGTCAAgtgatttgtattgttcttttaataaTAGTTCCATAGTTTTCTATATAGTTTTCTATTctaatatttattgtttatcaCAGTTTTAACCAGTACAGGGTCACTTTCattgctttctgttttgttttgtttttccttcaccACTGGCACAAAATAATCTCCCAGCTTTGTCCCTTAATTAATTTTGAGATTCGCTATAACGTTTTAGTGTAAGTTTTAATTGAGCAATGAATACATTCTATTATACAAGCATCTTTTCCTGTCCCCAGGCCTGTGTTCAACCTGGTTGGATTTTGTCTGCCTTTGCAGCCAGATAACTAAAAGGACAATTGACTTTCTtacccaaaaacaaaacaaaactgaaaagcgCCCTGTGAAAACTAAAcgacacattttctatttttataagagagacaaatatgtatttatgatgatgatgatgatgatgatgcataTGTATCTTACTGAACTGTGAACGTTTCCAGAGTATTTACTGACACTGTGACGACTGTGCGGTCGGCGCACCCTGCTGCCTCTTGTGGTGTCAGCGTCTGAGAGTTGCTCTTCTCCTGCGTTTGAGACGTTGTCGTTCCGGTCCAGAACGGGTCAAACGCGGCttggtggtggggtggggggatccTTTTGGAGACTTCTTGGGGTCTCCCTCGCTTAATGAGTCACCCAGCTTGCCAGCACTGGGCAAtgccacactgctgccctacCCAGTGGGGCAGTTTGCTACTGATGGGACAGTGAGACTGACGCACTGGACACTGCTGGACTGACCGAGACCTGGGGAGCCTTGAGTTTTGCCAGTTGAGCAAATATCTCTTGGCATTTTGGCACAGTACTAGGGGTGGTTATTGTCATCTTAAATGTCCTCTCGTTACTAAGGAGAAGAGAAGAAACGGGGCCCCTCTTCATCTCACTAATGTCCCGATTCACCGCcaggttattttttatttgatagtGATTGGTTTAAAACCTTAGACCTGTATATCAGCCTCAGAGCCAcccaaaacattaatattaaataaaataagactcTAGAAAA

Function

GO:

id name namespace
GO:0031231 intrinsic component of peroxisomal membrane cellular_component
GO:0005777 peroxisome cellular_component
GO:0005778 peroxisomal membrane cellular_component
GO:0005779 integral component of peroxisomal membrane cellular_component
GO:0044438 obsolete microbody part cellular_component
GO:0044439 obsolete peroxisomal part cellular_component
GO:0031903 microbody membrane cellular_component
GO:0042579 microbody cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012169 True 1631 mRNA 0.50 3 12142510 12146911

Neighbor

gene id symbol gene type direction distance location
AMCG00012166 stx4,LOC106945442 coding downstream 91299 12042632 ~ 12051211 (-)
AMCG00012165 NA coding downstream 100422 12038225 ~ 12042088 (-)
AMCG00012163 dctpp1,LOC102793672 coding downstream 110373 12030068 ~ 12032137 (-)
AMCG00012164 NA coding downstream 177692 11924321 ~ 11964818 (-)
AMCG00012160 NA coding downstream 245893 11890351 ~ 11896617 (-)
AMCG00012175 LOC106579300,LOC106521980 coding upstream 6258 12153169 ~ 12179736 (-)
AMCG00012176 NA coding upstream 34202 12181113 ~ 12185826 (-)
AMCG00012173 NA coding upstream 76383 12223294 ~ 12226142 (-)
AMCG00012180 NA coding upstream 121314 12268225 ~ 12279242 (-)
AMCG00012179 NA coding upstream 171990 12318901 ~ 12340418 (-)
G134936 NA non-coding downstream 23918 12118340 ~ 12118592 (-)
G134899 NA non-coding downstream 124952 12014352 ~ 12017558 (-)
G134855 NA non-coding downstream 374556 11744894 ~ 11767954 (-)
G134853 NA non-coding downstream 376094 11766072 ~ 11766416 (-)
G134849 NA non-coding downstream 482205 11659721 ~ 11660305 (-)
G135002 NA non-coding upstream 119692 12266603 ~ 12266826 (-)
G135008 NA non-coding upstream 215624 12362535 ~ 12362840 (-)
G135148 NA non-coding upstream 419762 12566673 ~ 12589807 (-)
G135151 NA non-coding upstream 431954 12578865 ~ 12632059 (-)
G135160 NA non-coding upstream 646037 12792948 ~ 12840313 (-)
AMCG00012170 NA other downstream 19785 12109540 ~ 12122725 (-)
AMCG00012171 NA other downstream 35096 12074004 ~ 12107414 (-)
G134803 NA other downstream 755531 11330466 ~ 11386979 (-)
AMCG00012111 NA other downstream 1180639 10934932 ~ 10961871 (-)
G134581 NA other downstream 1330629 10729775 ~ 10811881 (-)
AMCG00012174 NA other upstream 43104 12190015 ~ 12213799 (-)
G134981 NA other upstream 74294 12221205 ~ 12223185 (-)
G135146 NA other upstream 421340 12568251 ~ 13426065 (-)
AMCG00012196 NA other upstream 490182 12637093 ~ 12700730 (-)
G135152 NA other upstream 555539 12702450 ~ 12703485 (-)

Expression


Co-expression Network