AMCG00012197 (znf646,LOC107563786,LOC107727719,LOC107665149,LOC107549872,LOC102077593)


Basic Information

Item Value
gene id AMCG00012197
gene name znf646,LOC107563786,LOC107727719,LOC107665149,LOC107549872,LOC102077593
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12764572 ~ 12802068 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012197
ATGCAGGACCAAGGACGGACGATAGGCTTCCAGTGTAAGCAGTGTGATACGGTGTGCCCAAGCTGGCCCAGCCTCTTGGAGCACGTGGAGAGCCACTACCAGCACGAGGAGGAGCGCAGGTTCAAGTGCAACCAGTGTGGGCGTGGTTATAGGCACGCGGGGAGCCTGGTTAACCACAAAAAGACCCACGAGGTCGGCTCTTTCCAGTGCGCTGTGTGCCAGCGGGAGCTCACAAACCCTTTAGCACTTAAAAATCACCTCCGCATCCACACGCCGGGCAAGAACTTCCCCTGCTCGGTGTGCGGGAAGGCATTTCGGCTGGCCACCCAACTTGCCACGCACCAGAAGGTCCATAGCCTCCGAGGCTCCCCGGGCAAGTCCAGACGCTGCCCGGCTGCGGATGAGCGACCAGACGATTCCTATGCCTTGCCCGGCAACTCCAGTTTGACCGCAGACGCCTCAGACGTCTTTTCTGCAGATGCAAACGTCACCCTGGCTGTTGGCGATAGTTTGCAGCTCCACCCTTTTCTGAATCAGGCGGATGACATCCTCGATGACCACGAGGGTGGTGCCAAGCCGAGCTCGAGTCCGGGGAATGTGCCAGAGACTGAGGACTCTTCAGATTCTTCTGGGGAGAGCCAGAGGAACCACGCTGTCAACCTAGACGATGCTGGGACGGAAAAAACAAACTCCGATGAAGACCGTCCTTTTAAGTGTAACCAGTGTGAAAAGACATACCGGCACCATGGTAGCCTAATTAACCACAAGAAATCCCACCAGCTTGGGGCCTATGAGTGTAATGTCTGTTACAAGCAGTTCACTAACCTGGCAGCTCTGAACAGTCACCTGCGCATCCACACCAGATCCAAGTCCCGTCCCACGGCGGTTCCTCTGTCTGATCCCCCCACCGATAGTTCTGTCCCCCAAAATGGCGATGCTGCCAATTTCTGCCATTTGTGCGAGGTGGCTTTCTCCAGCGAAGCAGAGTTTCAGGATCACATTTTGCTGCACAACAACGCATCGCTATCGTTAGCGCTGCCTGATGATTTCTCGGAGGACCTTTCTTATGAGTACGGGGCAGGTGGATCCCCAGATGTGGATGGGTACCAGCCAGCCTTGAACGACTCCCTCCTGGACAACGCTGATAGTAAAGGAGAGGCCTACGATCAGGATCTGAGTTCAGTGAACGGTCAGCTATACACCTGCGCCTACTGCGGGGAGGGCTACCCTGACCTCGATAGCCTTAAAGAGCACTACCTGACGCATGACTCAGGCTTTCAAAGTGAGGAAGTGGTGGCCGACATCAAAGAGGAGGAGCCACAGCGTTCTGAGGAGGTGGCAGTGACTGTGGAGGAATCTAAAGCCAACATAGCTGCCACCACCGACCAGGCCGAGTCGGGCGAGAGGCGTTTTAAGTGCCAACTCTGTGGCAAGAGCTACCGACATGCCGGCAGCCTCATCAATCACAAGCGCTCCCACCAGACTGGCATCTACCAGTGCTCCATCTGCCGGAAACACTACCCTCACCTGGCAGCCTTAAAAAGCCACCTCCGCATCCACAAGTCCAAACCTTCTATCCTGCCCCTGAGCACGGAGGGAGACGACTGGCTGTCCCCAGAACCCCTAACCCTGGAAGGGCAGTGTTACGGCTTTCCCTTTTCCACCCACGGCGAAGAGAATGAGTTGGACATGCCCGAAGACATCGGACAGGGTGACAGCGCCGACGACCTAGAGAGCTTGGAGTTCCCGCCTTTTGATTCTGAGCTGGCTGAGAGTGCTCCTACTTCTCCCATCCTGCCGGATACAAGCTTCCCGGTGGAGAGGCACATGTGTGCTGACTGTGGGGAAACGTACGCGGATATCGCAGGCATCAAGGCCCACCAGTGCCCTCGCCGGGAAAGCATGAATGGCTTTGTGCATAATGTAGACTTCCAGGATCTGGAGGAAGGGGTTGACCATGACCACGATCTCGGCCATGACGATGAGGACAGTCAAGGGCCCGTGGGGTCCAAGCGACGGAAATGCGGCCCAGCCCAGAAACGCGTGGATGATTTCGAGGACCCAGAGGACTATGGTGAGATCTACCAGTGCTCGGTTTGTGGCAACCGCTACTCTGGCTTGTCGGCTTTGAAGAGCCACATGCGCTGTCACACGCACCCCCACGACACCCCCAGCAATGCAAGCCGCAGCTCGTCAGTCTCCACATTGGACGACGAGGCCAAGGTagagagtgaggaggaggaggaagaggaaggcgGGCTTCTCATCTGCAGCACGTGTGGGGAGAGCTTCTCAAATGAACGTGATCTGGAGGCCCACCAGTTATCACATGGACCACACGACGCTCTCCATGGCAGCCTTGTGCCGATGAAAACAGAGGACAAGAGCCACATCTGTGGGGATTGTGGTGTCACCTGTGCCAACTATCACGAGCTGGAGACCCACCACTGCGTCCACGAATCTGCCACGGCTGCCATGGAAGACGAGTTCGATGAGGAAGGAGACGCCGGGGAAGAAGGAAAAGCGGACCCTGGCTTAACTGCAGAGAGCCCAGGCTCTGCTGATCGACCCCACCGCTGTGATCAGTGTGGACGGGCCTATCGCCACGCCGGCAGCCTCCTCAACCACAAGAAGTCACACAAGACCGGTGTCTTCCGCTGCTTCGTCTGCCAGAAGCGCTTCTACAACCTGCTGGCGCTCAAGAACCATCAGAGGGTCCACTTTGATATCAAGAGGCACAAGTGTACTGAGTGCGGGAAAGCCTTCAAGATCCAGAAGCAGCTGGTCAACCACCAACGCATACACGAAGAGAACCGGCTCCGGACCAAGGAGCTCAACCTCCAGCTGCAGCACCTGATGCAGCTGAACAGGGCCGCCATGGACCCTACCGCTGACTTGCCCTCACTGCTGCAGCATTCCCTGGCTGGCGGGAGCAATGGCACCTCCTCTTGGCTGCAGTGCGGCAAGTGTGGGGGAGCCCATGACCCAGAGGGGGGCTGCCCCGGAAGGGGTCACCAGGTTGCGCATGCACAGTCTCAGACCTCGTCCTCAGAAGCCGTGGTGAAGAGTGAAGCCCATCTAGCCCCAGCTGCAGAAAATGATGCCAGTGCTAATGGGGAGGGCGTCAAGCTGGAAAAGCGTCCCTATTCGTGTGATCAGTGCGGCCGGACCTATCGGCACGCGGGCAGCCTGGTAAACCACAAGAACTCCCACAAGACTGGCCAGTACTACTGTACCATCTGCAACAACACCTACCCCAACCAGCTGGCCATGCGTAACCACTTGCGGCTGCACTTCGCTGTCAAGAAGTTTGTGTGTGCCGAGTGTGGCAAGGCCTTCCGCGGCCAGAAGCAGCTATCCAGCCACACTCAGGCACACGCCTGCCGCAAGAAGAAGGCCAGGGAAGCAGGGAGAGGCAGGAGGGCCAGCCAGGGTCGAAAGAGTAGCGGGGGGGACTCTGATGGCAAGCTTATTCCGAGTACCCGCTGCGTGGTGTGTGACCGCAATTTCCCCACAGTGGCCGAGTTTTCCACTCACGATTGTGTGACCAACCCCACCCGCCTCCTCCCTGCCAAGGTGGAGAATGGCAGCCCCCCCGCCCAGATCCAGTCCCCCGAAGAGCGACCCTTTGGCTGCGACATCTGCGGTCGCACCTACCGCCACGCCGGCTCACTGTGCGAGCAGTGCGGCAGGTCGTACCGGCACGCGGGCTCCCTCCTCAACCACAAGAACACCCACACCACCGGTGTCTACAACTGCGCGGTGTGCCTCAAAGAGTTCTCCAACCTCCTGGCCCTCAAGAACCACAGCCGCATCCACTCTGAGGCCAAGCGCTACAAGTGCCTGGACTGCGGCAAGGCCTTCCGGGTCTCCTCGCACCTGCTCAGCCACCGGCGCGTCCACACCAAAGAGCGGCCGTACTTCTGCTCCCCTTGCCAGCAGGGATTCTCCAGCAAGGGCAGCTACAAGCACCACCTGACATTGCACCGCACCCGGCCCCAGGACTTCGCCAATCAGAGGCTGGCGGAGGACCACGGAGACGGCCAGCCCCCATCCCAAGACGGAGGAGGAGGTGGACCCCCCAGCCTGCTGGGCTTCAGCATGGACCTCCTGGCCGATTGCTGA
>TU169738
attttatttgtattgtatattatgaCCATTATCAATACATTGAGATACCTATGCTAGCACTTTGCTGCTTCTTCTATTTATGGTTTATGTacgttattttattaaatattataatttacatgtttttttgtggtttgtttgcttgctttttttaaaaatgatataagTTACAGGTAAAGTTAACAGAACTTGTACTTCCTCATGAGAAATCTCTTCTGTTATAGCAACAAGCCTGATGAGAGCAGATAAAAAGGAAGACACCGGTACaatctaatttaataaaaattgaTATCTCAAACTAAGCAGATCAACACATTTTTGAGAAGCACCTGTTACTGCATGCATTGTACAAATGTAAACCACCTCCAAGCCAGGTTTCAAATGAatccacatttcacatttaagcCTGGGTTAAAAACAGTGGTGCAATatggtttatattttaagaaatgtttaacCTTGGAATAATATAAAACCGATCAAATATACAACCTGGATTTTTGCAACCTGGTTGAAGTATCTGAGGCCACTCTATCCCAGTGGGGTTCAGTAGGTTATGGGATTGAGGTTGGGATTCCGAACAGATGCGCCCATCTCCTGGCATTTGGCTTCATATCTGCACCAAGGACTacattgtcatttgttttgttttttgttatttttaattatttttaacactaccaacaattaattattcatcTATTTTTTTCATGATCTAAATCCTTAAAATGATTCCTTCCCAGTCCCGTATTCTTTGCCcctaacaaaaacacacacacagagaccagtATCACTCCTACGACTTTTATTAAGTCCCCTGActagaagaaattaaaaataattataataataataataatattagtgcAGACTCTCAATCACAAAATCAACAGAAACCTTTTAAAGAGCTCCCCATTTTGCTTGTCAAATTTAAGACATTCAATAACCAAATAGCCaggtaattaaatacaattatgaatcCATAATAAAAACTTTATGCCAATATAAAGGGTATGAGTTTGATGCTGAAATGCACCccagtataatataaatattaacaaactTACATTTTTGGTTCAATTAATTTCACTTATGTCTTACTTTACAACTGATGACTAAAATGAGTTTTGTACTGGGAGGTGTAAActttgaatatatgtatttattgattcgagagtaattgaataatttatttacaccCGGCTGGCATGAGACAGGAGGCAAAGAcagcaaaaaacacacacacaaaggtttATATTAAAGGATCTGTTGATTATGTGAGTTGTTGTGCAATATCAATGCTTTGAATGATCACCAACATTGGACATCGATAACATTGACTATTATCTATGACAATGTGAAGGATATATGAGAAAGCCACAATCTTCCAAGCCACTGTATATAGGCTTATAActcaacaacagtaataatatagTATGGATTCCccaaaaagtgcaaaacattgcaaaaaacaTCAGAAGAGATTCACCCCAAATCCatattggaaaagaaaagaaaggaaatctaaatatttcttacttttcaattattattttggataaTAATGGCTGTGAATAAAAGCTTGTATAGAAACAATAAGCAGTCAACAAAACATTGCATCCCTATATTCatccttttttaaaagcatagtCTACAGGATTACATATTAAAATCTCTTTTAAGGTTTTTAGTTGATGAAAGTGAACTCCAAGTTTCTTGGGACAGATCAAATCGAacctttgacccacccgctaatagcaaactacaaacctgtacatcatagcggttacattttaAGTCATTTTCTTATCAATGTCACAGGCAGATACAGACAGAATCACATCCTTTTTTGGCCCCGCTGTAGTGTTTGTTTGAAGGATCATCTGTCATTTCCCGGTATgaatatgtttgtgtttctaaGAATGTATTCTTGTGACAGATAGCACAAAGATTAAAGATTACCTACCGCTTATTTAATCACACACTATTTCTGATTTGCAGAAGTATTTGTTAGAGACACTGTTATTAATGGCTGGGAGTGGGGAAGCGGAAACATGCTACTGTCCTGACTGAGTGATCGACTGTGGCATAGATTCTGCAGACATTTTGCAATAAGGGCAAGTAGGATTATTCTTTGCAGCAGAGACAAACAGTGCAGACTACTTTTGGAGGGCAGTGGACCCCCGTTCGCATGCGATCAATGCCAAAGCCTTTTCGGGACGCTGGCGGAGCTGCAGGAGCACCAGGAGGGCCACGGAGGCGAGAAGCCCCATGTGTGCGAGCACTGTGGCCGCACCTACCGCCATGCCGGCTCCCTGCTCAACCACAAGAACAGCCACAAGACGGGCTCCTACTCCTGCGCCGCCTGCCAGAAGGAGTTCTCCAACCTCATGGCTCTGAAGAACCACAGGCGCATCCACACCGAGCCCAAGCGCTACAAGTGCCCGGACTGTGGCAAGGCCTTCCGGGTGTCAACGCAGCTGATCTGCCACCAGCGCGTCCACACTAAGGAGAAGCCCTTCTCCTGCCTCCAGTGTGGCAAGAGCTTCTCTAGCAAGTCCAATCTCAGGCATCATCAGAAGGTGCACAAAGCCAGGCTGGGAGCACTAGGTCTGGATGCCCCCTTGGACATGGGCGGCAGCAGCCTGCTGGGCTTCAGCATGGACCTCCTGGCCGATTGCTGATGAGAACTGTCACGGGAGCGGTGGAACACATGGGAGGTTCAGGGAAAGACCCGTGGTCCCGGTTATCAAGGTTTTTAAAGCCTATGACCCACCCTCACCTCTTTAgcagtaatttaaaatactttttttgtttattttaataagggcTTCGGATCATACTATAACATTTACCGGACAGTTTTTTCTTGAATTCCttgaaaacctttttcttttaatatatttttcttctttatttattttacttctaaCATTGAGATCACTGCTTGAAAGGAAGTCTGCCATCACACTGGGTTTTGAATGCTGTTTCTTTtagaattctttttttttttgtttaaagaaattaCCTCGAATACCCTGGAAATCTTCCTGTCTGATGAACACACCCCTTTGCttagaaaagcaaaactaaattgaCGTCCCTGAAGGAAGCGTAAATTATAcgtcaaaacacaaaaataatattaataatcttttCTGTATTGGTAAAGAATGAAAGCAATGCAATGGTGCCCATCAGTATTAGTGCCAGAAAAAGGTAAtctattatatgtatttatttaccagTGCTAAATGTCAGCTATGAAGGTCAAGTTAAATTCTCCAGTAGTGTGTTTGAgaaaactgtactgtacagatTAGTGCCCTTTGGTGTGAAATGGCATTAACCCAGTTCGATAAGGTATAGAATAAGTTTTTTTTTCGGTTCTGAtgcagaattatttaaaagcagaatgtctgtctgtttgtggcCCCAGTGTAAGTGTGGGTGAGATGTAGACTGTACAGGTGTCCTCCAAAACGCAAGCTTCCTGGACGTATGCGATTTTCCTGTCCATGAGAGGTGCACCTTTTTAACCTTGcgatatatataattaaaattcttAATTTAATGACTTGAGTTTAAGTGACTCCACACGGTACATGTACAGCTGCATTCAAAATGGTCTGAAAGTGAAATACTATCCAAAATATAACATCTTAGCGTTAGGTGTGATTTTCCACTCTTATTTACTTGCATAAATAGGCTTAAAGGGAAATGCAAGCAGAACAggatatacaatatattttaaaccatgcAGAATAAGTATTTAGACTAATGTGAACTTCCCCTGCTTTTGTCTCGGCTCGCAAGTTTATTAAGACAAAGCTTTGggaaaatatacagctctggaaaaaatttagaccactgcacatttttctttaaatcagcatttctacatttatggcagccattccattcctgCATGAATCAaaccacgtacaaggttgtcctggaagaaaactggcttcctgtttgttttttccagcaggacaatgttccatgccacacagccaggtcaatcaaccttgtcatggccagcccaatctccagacatGAACCCCATTGagaacctctggaatgtgatcaagaggaagatggatggtcacaagctaTCTAACAAAGCTGAGCTGCTAGAATTTGtgcaccaggagtggcataaagtcacccaacatcaatatGAAAGAGTGGTGGAcagcatgccaagacgcatgaaagctgtgaatgaaaatcagggttattccgccaaatattgatttctgaactcttcctaagttaaaacagtattgtgttgtttaaaaatgaatattaacttattttctttgaattattcgaggtctgacaacactgcatcttttttggtattttggccagttgtcattttctgcaaataaatgctctaaatggcaatatttttatttgaaatgttgtcgGTAGTTCatggaataaaacacaaatgttcgTTTTACCTGAACACATACCTATCGattgtaaaaccagagaaactgatcattttgcagtggtctcttaattttttccagagctgtatttactGTCTCCATTCAATATAGTTGTAGGATGTTTGGGATCACCAGATCAGATCTCCCTCATTGTTTTTCATGACCACCCTTAACTTAAAACTGTaaatagacttttttttaattactttttctattgttattataataattgaatgtcCTCATAAgggaattaattattaatatttgtgagcgtgtgtgtgtgtacatatggTCACTCAGACCTTCACAAAACGGTGATCAGAgttagaaataatatatttttggtgGTAGGCGTTTTATAGTATAGTGAATTGAGATGGTGGGTTTTCCACTTTTTGCTGGGGAAAGTGGAAAGGTTTTTCATTCAACAAGGGGTGAGAACAACCATGCAAATGAAGTGGAATCCACCAATAACATTTCACCTTCAGTGATTCCTCTGGTGTTGCGACGTATTAAACAAGACCAGCAACGAGGAACACAAGTTGGGGCTACAATGTTCCCAGTGCACTTAAGGCAGCTAAGCTTTGACAATGTCTTTTCAActgttcaggttcaggttcagtgACTGAAGATGCCTACAAAAGCTTTTGAATTAGGGCTCTCCAGGATCAGGGCTACTGACCACCTTTCTCCTCATCTCCGTACTTTAAAGGATCAATTTGTAGGGACTCGGAAAAGGCTTAAACGTGTTCCAATGAGGCAAGTAAGCTGTCCGTGACGGTTATACCGTGCAGAGTGGTGCACGCCCACACACAAGGGAGCACCCAGAATATTGTCATAACACGCGTTTATACACATCCAATATAGgaagcaataaatatataaacgcCATCTGAACAAGAATTTAAGTAATAgtataatatatagattttttttaaataggtgtACCTGAAGTTTTTGTGACTCACAGTTCTAACAACAATATCAATGACACTTAGGTTTTTAGGtttcaatttgtgttttctAGTCAGGCTTTTAGATCATCACTGTTactaaataatcataataataataaataaatcttggTGGGAATCAAATGAAGTTGTAGTTGAGATCTCCTCTAGTGAGAGGCCTTACTTTTGGGCACCACTGTACTTCACAAAGattgtttttactgtttgtttttaaaatatatatatttatttgtcatcATTCTGGTTTCATTGAAATGATTTGAACAGTTTACACATTGagggtgggggatggggggagcTTGGATGATTGATAGTTCCCTCTAGATGGATTATTGGAGAACTCTTATTTTAGAGCAATGCATCCCTTTTTGACACTGTCCTGCACACGATACCCCTCCTGTTAGACATGTGTTTGGTTGGCtaatgtgaatttaaaagaaaaaagaaaacttaaaaaaaaaaaaaaaaaaaatctattttattgaaACTAATGGGCCATTTTAGAATCTCTGTTAACTGTACGTT

Function

symbol description
znf646 Predicted to enable metal ion binding activity. Orthologous to human ZNF646 (zinc finger protein 646).

NR:

description
PREDICTED: zinc finger protein 646-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012197 False 4125 mRNA 0.59 4 12767850 12776922
TU169738 True 5962 lncRNA 0.38 2 12764572 12802068

Neighbor

gene id symbol gene type direction distance location
AMCG00012195 NA coding downstream 8225 12721237 ~ 12756347 (-)
AMCG00012188 NA coding downstream 122960 12633737 ~ 12641612 (-)
AMCG00012185 NA coding downstream 260067 12483528 ~ 12504505 (-)
AMCG00012184 NA coding downstream 324100 12434496 ~ 12440472 (-)
AMCG00012183 NA coding downstream 341229 12403992 ~ 12423343 (-)
AMCG00012201 NA coding upstream 4894 12806962 ~ 12825753 (-)
AMCG00012202 NA coding upstream 57693 12859761 ~ 12886799 (-)
AMCG00012205 NA coding upstream 101189 12903257 ~ 12923677 (-)
AMCG00012204 NA coding upstream 127719 12929787 ~ 12938820 (-)
AMCG00012203 NA coding upstream 152937 12955005 ~ 12960892 (-)
G135151 NA non-coding downstream 132513 12578865 ~ 12632059 (-)
G135148 NA non-coding downstream 174765 12566673 ~ 12589807 (-)
G135008 NA non-coding downstream 401732 12362535 ~ 12362840 (-)
G135002 NA non-coding downstream 497746 12266603 ~ 12266826 (-)
G134936 NA non-coding downstream 645980 12118340 ~ 12118592 (-)
G135161 NA non-coding upstream 61792 12863860 ~ 12952125 (-)
G135184 NA non-coding upstream 348447 13150515 ~ 13214542 (-)
G135193 NA non-coding upstream 468744 13270812 ~ 13279294 (-)
G135202 NA non-coding upstream 519663 13321731 ~ 13329044 (-)
G135217 NA non-coding upstream 615337 13417405 ~ 13418804 (-)
G135152 NA other downstream 61087 12702450 ~ 12703485 (-)
AMCG00012196 NA other downstream 63842 12637093 ~ 12700730 (-)
G134981 NA other downstream 541387 12221205 ~ 12223185 (-)
AMCG00012174 NA other downstream 550773 12190015 ~ 12213799 (-)
AMCG00012170 NA other downstream 641847 12109540 ~ 12122725 (-)
G135164 NA other upstream 93100 12895168 ~ 12911887 (-)
G135172 NA other upstream 280153 13082221 ~ 13101480 (-)
AMCG00012222 NA other upstream 429554 13231622 ~ 13232389 (-)
AMCG00012226 cd2bp2 other upstream 494351 13296419 ~ 13300421 (-)
AMCG00012233 NA other upstream 717598 13519666 ~ 13524815 (-)

Expression


Co-expression Network