AMCG00012217


Basic Information

Item Value
gene id AMCG00012217
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13269196 ~ 13276971 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012217
agagagagagagagagagagagagagagagagagagagaggttgacAGTCTAACTTTGTGCAGTCTtcgtgagagagaaagaaaggtgTTCAGACAGTTCCCTTGTACAGTGTCTGAgatagaagagagagagagagagaaagaggtcACTGCACTGAAAACCagctaaaaaaatgtttttctgactAAACTTATTGCACAGGAAAGAGAGGAGGGCAATGATAAAGGGAGGGCAGCTAGAAACAAACGAAAAGtaagtgagagggagggagaaaagggGTGTTTCTCAGTTGAGCACAAATGACTTGCcttcactctctcacacacagatatatattcTCACGCAcgcatagaaaaaaaaacagtgacacAAATGTACACACAGAGAGCCAGGTACTGTCTAGTGCCAAGGTGACTGGAATATAGTTTGATTAACCGGGAAGAGGAAAACATTACTCTCCCTCTGTTTATCTCACTCCTGTGTATCATTCTCGTAGACCTTCAGCACCTTTCAaaacgagagagaaagagagagagagaaaacagctgAACTCCAGACTGTTACCTCCAGCTAATGGACTGCGGTTAGAGACTTACTAGGAAATTCCCAAGCAAAAACTTTGATCTGCAGTGAAGCTGAGTCACCCTGTGCAAAGAATTTGCCATCAAGTCTGGACAAGAGGAGAACTTCAATCTCAGGTGTACCTTATGGGCACAAACAAATATTGCAGCACCTTCTGCTGGGAAGGCATCTGGAGCAGAAACTGCACCGTAACAACACATCTGGTGTCGGCCTCTGAAGAGTCTCGGGACGGTCTGTAGCCTCCAGCTGGCAGAAGGGGAAGTTTGGGCTCGGCTCCTTGTCATTGGCAGTATCAAGGTTTTTCACCATTCTTGCCTCATCCACATATTTGAGAGATACACagacaggggcagactggggaAGAAACACTTAGGCCCCCACCTCACAGCTCCAGGCGGATTAAACATGGAAAGCTAGACAGAGAACACAATATCCAACTTGATTAAGAGCTGAAACAGATTTCATCCTCACTGGATGCCTTAAGGACACACAGGAAATCACGTCTGGGGTACGAAGCAAAAGACAAAAGTTGCGTTGGTATTAGAGCGAGCTGatcagattttagtttttttggttttctatgAGAAGTGGGGAAATCCAGAGCCAAAAAGGACGCCCACCTTAAGTTCCCAGAATCTGACAATTGAGGGCAGAGAAAGAAGGAAGTTGAgagcttgagagagagagaaggagagggagaaggactGCACTTTCAGCAACAGATCATCTCGTTTCCTGTGAGGAGTTAAAGGGAGAAGACAAGACGGAAAGGGAAACAGAGGAGGGAGGCGGGAGGCACTGGGACGGTGGAGAGAAAGcaATGGAGATGAGTGTAGTTTCAGAGGTGCCCAACGGGAAATCAGGGAAGGATGACGAGACGGTCCCCCTGAACGTGACCCCGGGCCTGGGTGCGGAGGTTCGGCGCAGTGCCCCCGGTAAACTGCTGAAGGAATACCGCATTCTCGCCATTGCAAGCATCGTGTGTGGCCTCTCCTGCCTGGGCATGGTGGCGCTCATCAACTCTGTCAAGGTCCGGGAGTGTAGAGCCACGGACCCTGAGAGAGCGCAGCGCTGCTCCCGCAGAGCACGCAAATACAGCCTGCTGGCCATTGGGCTGTGGGTGGGCCTGCTCATACTGGTCCCCACTCTCATGGCCCTGGTGTCCTACCTCTTGACCCTGCAAAACTGACCGACAGCCCACAACACGGAGACCTGCTTTCCATTGAGGGCGGCAGACAGAACTCGTGCAATATCGGGAAACCtgcaataaagaaaaggaaaaatggaCTCAGGATGTGGACTTTTGCACAAAAAAATATGGACAGAAATGTACTTTGTCAGACCAATTAGGAATGTACTGTATACACATCGTTCTCCATCAGAAGAACTCCATTGATTCTCCACAGCGCTAATGAAGACACTGACCACTGCAGCATCTCTGGCCCACTCTGACTGACTGGACTGACCAGAATGCATGAGTCACTGGGCTGCCTgacttacagtgcatccggaaagtattcacagcgcttcactttttccacatttt
>TU169632
GTATAACTGAGCCcgaaagagagaaagaacaataatacaagCAGCCACTTTAAAGAGAAatcgtgagagagagaggaaggggggggcGGCGGGTGTTAATACACCACAGACTTAGAAGTTTCCGCTCTGTTCGGTCACAGCTTTAGGAATGTGAGAGAaagagcgagaaagagagagagagagagagagagagagagagagagagagagaggttgacAGTCTAACTTTGTGCAGTCTtcgtgagagagaaagaaaggtgTTCAGACAGTTCCCTTGTACAGTGTCTGAgatagaagagagagagagagagaaagaggtcACTGCACTGAAAACCagctaaaaaaatgtttttctgactAAACTTATTGCACAGGAAAGAGAGGAGGGCAATGATAAAGGGAGGGCAGCTAGAAACAAACGAAAAGtaagtgagagggagggagaaaagggGTGTTTCTCAGTTGAGCACAAATGACTTGCcttcactctctcacacacagatatatattcTCACGCAcgcatagaaaaaaaaacagtgacacAAATGTACACACAGAGAGCCAGGTACTGTCTAGTGCCAAGGTGACTGGAATATAGTTTGATTAACCGGGAAGAGGAAAACATTACTCTCCCTCTGTTTATCTCACTCCTGTGTATCATTCTCGTAGACCTTCAGCACCTTTCAaaacgagagagaaagagagagagagaaaacagctgAACTCCAGACTGTTACCTCCAGCTAATGGACTGCGGTTAGAGACTTACTAGGAAATTCCCAAGCAAAAACTTTGATCTGCAGTGAAGCTGAGTCACCCTGTGCAAAGAATTTGCCATCAAGTCTGGACAAGAGGAGAACTTCAATCTCAGGTGTACCTTATGGGCACAAACAAATATTGCAGCACCTTCTGCTGGGAAGGCATCTGGAGCAGAAACTGCACCGTAACAACACATCTGGTGTCGGCCTCTGAAGAGTCTCGGGACGGTCTGTAGCCTCCAGCTGGCAGAAGGGGAAGTTTGGGCTCGGCTCCTTGTCATTGGCAGTATCAAGGTTTTTCACCATTCTTGCCTCATCCACATATTTGAGAGATACACagacaggggcagactggggaAGAAACACTTAGGCCCCCACCTCACAGCTCCAGGCGGATTAAACATGGAAAGCTAGACAGAGAACACAATATCCAACTTGATTAAGAGCTGAAACAGATTTCATCCTCACTGGATGCCTTAAGGACACACAGGAAATCACGTCTGGGGTACGAAGCAAAAGACAAAAGTTGCGTTGGTATTAGAGCGAGCTGatcagattttagtttttttggttttctatgAGAAGTGGGGAAATCCAGAGCCAAAAAGGACGCCCACCTTAAGTTCCCAGAATCTGACAATTGAGGGCAGAGAAAGAAGGAAGTTGAgagcttgagagagagagaaggagagggagaaggactGCACTTTCAGCAACAGATCATCTCGTTTCCTGTGAGGAGTTAAAGGGAGAAGACAAGACGGAAAGGGAAACAGAGGAGGGAGGCGGGAGGCACTGGGACGGTGGAGAGAAAGcaATGGAGATGAGTGTAGTTTCAGAGGTGCCCAACGGGAAATCAGGGAAGGATGACGAGACGGTCCCCCTGAACGTGACCCCGGGCCTGGGTGCGGAGGTTCGGCGCAGTGCCCCCGGTAAACTGCTGAAGGAATACCGCATTCTCGCCATTGCAAGCATCGTGTGTGGCCTCTCCTGCCTGGGCATGGTGGCGCTCATCAACTCTGTCAAGGTCCGGGAGTGTAGAGCCACGGACCCTGAGAGAGCGCAGCGCTGCTCCCGCAGAGCACGCAAATACAGCCTGCTGGCCATTGGGCTGTGGGTGGGCCTGCTCATACTGGTCCCCACTCTCATGGCCCTGGTGTCCTACCTCTTGACCCTGCAAAACTGACCGACAGCCCACAACACGGAGACCTGCTTTCCATTGAGGGCGGCAGACAGAACTCGTGCAATATCGGGAAACCtgcaataaagaaaaggaaaaatggaCTCAGGATGTGGACTTTTGCACAAAAAAATATGGACAGAAATGTACTTTGTCAGACCAATTAGGAATGTACTGTATACACATCGTTCTCCATCAGAAGAACTCCATTGATTCTCCACAGCGCTAATGAAGACACTGACCACTGCAGCATCTCTGGCCCACTCTGACTGACTGGACTGACCAGAATGCATGAGTCACTGGGCTGCCTgacttacagtgcatccggaaagtattcacagcgcttcactttttccacattttNNNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012217 False 2129 mRNA 0.49 3 13269367 13276967
TU169632 True 2304 TUCP 0.48 3 13269196 13276971

Neighbor

gene id symbol gene type direction distance location
AMCG00012218 NA coding upstream 66804 13187382 ~ 13202392 (+)
AMCG00012212 NA coding upstream 86366 13166600 ~ 13182830 (+)
AMCG00012213 NA coding upstream 120622 13144427 ~ 13148574 (+)
AMCG00012211 NA coding upstream 137234 13127168 ~ 13131962 (+)
AMCG00012210 NA coding upstream 147190 13120013 ~ 13122006 (+)
AMCG00012223 NA coding downstream 26085 13303056 ~ 13307523 (+)
AMCG00012224 mylpf,LOC108249004,LOC108443170 coding downstream 40944 13317915 ~ 13323389 (+)
AMCG00012227 NA coding downstream 248713 13525684 ~ 13527970 (+)
AMCG00012236 NA coding downstream 264182 13541153 ~ 13543947 (+)
AMCG00012229 pelo,LOC107674509 coding downstream 273083 13550054 ~ 13556902 (+)
G135110 NA non-coding upstream 7142 13261759 ~ 13262054 (+)
G135067 NA non-coding upstream 21471 12959748 ~ 13247725 (+)
G135097 NA non-coding upstream 52836 13212674 ~ 13216360 (+)
G135073 NA non-coding upstream 283054 12985507 ~ 12986142 (+)
G135072 NA non-coding upstream 284102 12984445 ~ 12985094 (+)
G135117 NA non-coding downstream 10695 13287666 ~ 13298200 (+)
G135131 NA non-coding downstream 95632 13372603 ~ 13397636 (+)
G135137 NA non-coding downstream 140434 13417405 ~ 13421051 (+)
G135138 NA non-coding downstream 150380 13427351 ~ 13427999 (+)
G135226 NA non-coding downstream 200591 13477562 ~ 13484478 (+)
G135070 NA other upstream 295143 12968377 ~ 12974053 (+)
G135038 NA other upstream 483136 12784088 ~ 12786060 (+)
G135037 NA other upstream 492039 12770783 ~ 12777157 (+)
AMCG00012191 NA other upstream 545002 12702323 ~ 12724194 (+)
G135026 NA other upstream 553081 12566212 ~ 12716115 (+)
G135058 NA other downstream 145464 13422435 ~ 13425359 (+)
AMCG00012228 NA other downstream 194130 13471101 ~ 13508799 (+)
G135240 NA other downstream 242450 13519421 ~ 13520494 (+)
G135264 NA other downstream 307299 13584270 ~ 13585916 (+)
AMCG00012245 NA other downstream 530242 13807213 ~ 13817545 (+)

Expression


Co-expression Network