AMCG00012220


Basic Information

Item Value
gene id AMCG00012220
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 13259410 ~ 13266847 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012220
ATGGAGCGAGGGAGTGATGCCATCCTGGCCACTGAGAGGTACGGCTCCCAGGAGAGGTGGAGCTACCGGCTGAAGGATGGGAGGatggagagcgagagagagggagaggagaggaggggtaCAGCCGCTTCTCTAATGAGTGTTTTTAAAAGTGTATTCCTGCCCCAGGGCTATCCAGAGAGTGTCAGTGAAGACTATCTACAGTATCAGTTCTGGGACACTGTGCAGgcaTTCTCCAGTTCTCTCTCGGGGACTCTGGCCACTCAGGCGTCTCTGAgaggggttggggtgggggacCGGGAGGCCACCGTCGCCGCAGCAACCATTACCTGGATACTAAGAGaTGGGACAGGCATGTTGGGCAGGATCCTGTTTGCCTGGGTTAAAGGgTTGTTTGCTGATGTTCTGAATGACTTTGCCATGTTTATAGAGATTGTGGCGCCCGCCTTCCCAGCATGCTTCACTCTCATCATATGCATCGCTGGGGTCTTTAAGGTGAGCAGGAAGTGGAGCTTCACTGGTGGGGGTGGCAGgttgaCCTTTGCCCTCTTCTTTCTCTTCACCTCACTGCACCTCTTCGCCAACTACTGGGCAGTGCGCTCCGTCATCATGGAGACGCTCAACCAGGCCCGGCTCTCCATCCTCACCCACCAATACCTGCTGGATGGGCGTGTCCTCACCCCTGCGCTGGCCAATCACAGAGAGCCTGTGTTCCCGGGCGCAGTGTCTCAGCGCGGTGCTGTCCTCACACTGCCCACTGGGGGGAGCCGTGGGGGCACTGAGGGAGAGCTGGACACAGGCAGACGCTCGGGggctgaAAGAGGCCGGCTGGCAGACTGACCGCACCTTGCTGGACTGGGATGAGTGGAGAGCAGACTGGGGGAAGAAGAcagactgagagaaagagagaatgattgtgtgtgtgtgagtgtgtctgtatgtctgtggaTGGCAGTGTGAGCCAGCGTGTCAGTACGTGTGTGAGTCCGTCACTTGTGccagccagtgtgtcagtctgtcagtgtgtgtgtcggaGG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process

KEGG:

id description
ko00100 Steroid biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012220 True 1037 mRNA 0.58 9 13259410 13266847

Neighbor

gene id symbol gene type direction distance location
AMCG00012219 NA coding downstream 36854 13208091 ~ 13222556 (-)
AMCG00012221 NA coding downstream 97147 13155697 ~ 13162263 (-)
AMCG00012214 NA coding downstream 115930 13135743 ~ 13143480 (-)
AMCG00012216 NA coding downstream 158036 13087973 ~ 13101374 (-)
AMCG00012215 NA coding downstream 175345 13082423 ~ 13084065 (-)
AMCG00012225 NA coding upstream 14249 13281096 ~ 13291869 (-)
AMCG00012232 NA coding upstream 198625 13465472 ~ 13486579 (-)
AMCG00012230 NA coding upstream 229640 13496487 ~ 13506591 (-)
AMCG00012234 NA coding upstream 243368 13510215 ~ 13518859 (-)
AMCG00012235 LOC102795145,LOC101068670 coding upstream 269348 13536195 ~ 13539367 (-)
G135184 NA non-coding downstream 44868 13150515 ~ 13214542 (-)
G135161 NA non-coding downstream 307285 12863860 ~ 12952125 (-)
G135160 NA non-coding downstream 419097 12792948 ~ 12840313 (-)
G135151 NA non-coding downstream 627351 12578865 ~ 12632059 (-)
G135148 NA non-coding downstream 669603 12566673 ~ 12589807 (-)
G135193 NA non-coding upstream 3965 13270812 ~ 13279294 (-)
G135202 NA non-coding upstream 54884 13321731 ~ 13329044 (-)
G135217 NA non-coding upstream 150558 13417405 ~ 13418804 (-)
G135333 NA non-coding upstream 485063 13751910 ~ 13818084 (-)
G135405 NA non-coding upstream 587711 13854558 ~ 13856288 (-)
AMCG00012222 NA other downstream 27021 13231622 ~ 13232389 (-)
G135172 NA other downstream 157930 13082221 ~ 13101480 (-)
G135164 NA other downstream 347523 12895168 ~ 12911887 (-)
AMCG00012197 znf646,LOC107563786,LOC107727719,LOC107665149,LOC107549872,LOC102077593 other downstream 457342 12764572 ~ 12802068 (-)
G135152 NA other downstream 555925 12702450 ~ 12703485 (-)
AMCG00012226 cd2bp2 other upstream 29572 13296419 ~ 13300421 (-)
AMCG00012233 NA other upstream 252819 13519666 ~ 13524815 (-)
AMCG00012238 NA other upstream 343639 13610486 ~ 13667607 (-)
G135318 LOC100846954 other upstream 437999 13704846 ~ 13705612 (-)
AMCG00012261 NA other upstream 823221 14090068 ~ 14094688 (-)

Expression


Co-expression Network